no code implementations • 14 Oct 2024 • Robert Graf, Florian Hunecke, Soeren Pohl, Matan Atad, Hendrik Moeller, Sophie Starck, Thomas Kroencke, Stefanie Bette, Fabian Bamberg, Tobias Pischon, Thoralf Niendorf, Carsten Schmidt, Johannes C. Paetzold, Daniel Rueckert, Jan S Kirschke
Our findings highlight the potential of using advanced embedding techniques like DAEs to detect data quality issues and biases in medical imaging datasets.
1 code implementation • 26 Feb 2024 • Hendrik Möller, Robert Graf, Joachim Schmitt, Benjamin Keinert, Matan Atad, Anjany Sekuboyina, Felix Streckenbach, Hanna Schön, Florian Kofler, Thomas Kroencke, Stefanie Bette, Stefan Willich, Thomas Keil, Thoralf Niendorf, Tobias Pischon, Beate Endemann, Bjoern Menze, Daniel Rueckert, Jan S. Kirschke
Training on auto-generated annotations and evaluating on manually corrected test data from the GNC yielded global dice scores of 0. 900 for vertebrae, 0. 960 for intervertebral discs, and 0. 947 for the spinal canal.
1 code implementation • 16 Jul 2021 • Tim Hahn, Jan Ernsting, Nils R. Winter, Vincent Holstein, Ramona Leenings, Marie Beisemann, Lukas Fisch, Kelvin Sarink, Daniel Emden, Nils Opel, Ronny Redlich, Jonathan Repple, Dominik Grotegerd, Susanne Meinert, Jochen G. Hirsch, Thoralf Niendorf, Beate Endemann, Fabian Bamberg, Thomas Kröncke, Robin Bülow, Henry Völzke, Oyunbileg von Stackelberg, Ramona Felizitas Sowade, Lale Umutlu, Börge Schmidt, Svenja Caspers, German National Cohort Study Center Consortium, Harald Kugel, Tilo Kircher, Benjamin Risse, Christian Gaser, James H. Cole, Udo Dannlowski, Klaus Berger
The deviation between chronological age and age predicted from neuroimaging data has been identified as a sensitive risk-marker of cross-disorder brain changes, growing into a cornerstone of biological age-research.
1 code implementation • 22 Mar 2021 • Lukas Fisch, Jan Ernsting, Nils R. Winter, Vincent Holstein, Ramona Leenings, Marie Beisemann, Kelvin Sarink, Daniel Emden, Nils Opel, Ronny Redlich, Jonathan Repple, Dominik Grotegerd, Susanne Meinert, Niklas Wulms, Heike Minnerup, Jochen G. Hirsch, Thoralf Niendorf, Beate Endemann, Fabian Bamberg, Thomas Kröncke, Annette Peters, Robin Bülow, Henry Völzke, Oyunbileg von Stackelberg, Ramona Felizitas Sowade, Lale Umutlu, Börge Schmidt, Svenja Caspers, German National Cohort Study Center Consortium, Harald Kugel, Bernhard T. Baune, Tilo Kircher, Benjamin Risse, Udo Dannlowski, Klaus Berger, Tim Hahn
For comparison, state-of-the-art models using preprocessed neuroimaging data are trained and validated on the same samples.