no code implementations • 23 Nov 2024 • Ming Hu, Kun Yuan, Yaling Shen, Feilong Tang, Xiaohao Xu, Lin Zhou, Wei Li, Ying Chen, Zhongxing Xu, Zelin Peng, Siyuan Yan, Vinkle Srivastav, Diping Song, Tianbin Li, Danli Shi, Jin Ye, Nicolas Padoy, Nassir Navab, Junjun He, ZongYuan Ge
Surgical practice involves complex visual interpretation, procedural skills, and advanced medical knowledge, making surgical vision-language pretraining (VLP) particularly challenging due to this complexity and the limited availability of annotated data.
1 code implementation • 21 Nov 2024 • Tianbin Li, Yanzhou Su, Wei Li, Bin Fu, Zhe Chen, Ziyan Huang, Guoan Wang, Chenglong Ma, Ying Chen, Ming Hu, Yanjun Li, Pengcheng Chen, Xiaowei Hu, Zhongying Deng, Yuanfeng Ji, Jin Ye, Yu Qiao, Junjun He
Despite significant advancements in general artificial intelligence, such as GPT-4, their effectiveness in the medical domain (general medical AI, GMAI) remains constrained due to the absence of specialized medical knowledge.
1 code implementation • 19 Nov 2024 • Junlong Cheng, Bin Fu, Jin Ye, Guoan Wang, Tianbin Li, Haoyu Wang, Ruoyu Li, He Yao, Junren Chen, Jingwen Li, Yanzhou Su, Min Zhu, Junjun He
To facilitate research on foundational models in medical computer vision, we release the IMed-361M and model at https://github. com/uni-medical/IMIS-Bench.
no code implementations • 15 Oct 2024 • Ying Chen, Guoan Wang, Yuanfeng Ji, Yanjun Li, Jin Ye, Tianbin Li, Bin Zhang, Nana Pei, Rongshan Yu, Yu Qiao, Junjun He
We will fully release SlideChat, SlideInstruction and SlideBench as open-source resources to facilitate research and development in computational pathology.
no code implementations • 2 Sep 2024 • Adrito Das, Danyal Z. Khan, Dimitrios Psychogyios, Yitong Zhang, John G. Hanrahan, Francisco Vasconcelos, You Pang, Zhen Chen, Jinlin Wu, Xiaoyang Zou, Guoyan Zheng, Abdul Qayyum, Moona Mazher, Imran Razzak, Tianbin Li, Jin Ye, Junjun He, Szymon Płotka, Joanna Kaleta, Amine Yamlahi, Antoine Jund, Patrick Godau, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Dominik Rivoir, Alejandra Pérez, Santiago Rodriguez, Pablo Arbeláez, Danail Stoyanov, Hani J. Marcus, Sophia Bano
The field of computer vision applied to videos of minimally invasive surgery is ever-growing.
no code implementations • 29 Aug 2024 • Chong Wang, Mengyao Li, Junjun He, Zhongruo Wang, Erfan Darzi, Zan Chen, Jin Ye, Tianbin Li, Yanzhou Su, Jing Ke, Kaili Qu, Shuxin Li, Yi Yu, Pietro Liò, Tianyun Wang, Yu Guang Wang, Yiqing Shen
To address these challenges, we also identify future research directions of LLM in biomedicine including federated learning methods to preserve data privacy and integrating explainable AI methodologies to enhance the transparency of LLMs.
1 code implementation • 27 Aug 2024 • Yiqing Shen, Zan Chen, Michail Mamalakis, Yungeng Liu, Tianbin Li, Yanzhou Su, Junjun He, Pietro Liò, Yu Guang Wang
While large language models (LLMs) have achieved much progress in the domain of natural language processing, their potential in protein engineering remains largely unexplored.
1 code implementation • 6 Aug 2024 • Pengcheng Chen, Jin Ye, Guoan Wang, Yanjun Li, Zhongying Deng, Wei Li, Tianbin Li, Haodong Duan, Ziyan Huang, Yanzhou Su, Benyou Wang, Shaoting Zhang, Bin Fu, Jianfei Cai, Bohan Zhuang, Eric J Seibel, Junjun He, Yu Qiao
Large Vision-Language Models (LVLMs) are capable of handling diverse data types such as imaging, text, and physiological signals, and can be applied in various fields.
no code implementations • 6 Jul 2024 • Guoan Wang, Jin Ye, Junlong Cheng, Tianbin Li, Zhaolin Chen, Jianfei Cai, Junjun He, Bohan Zhuang
Supervised Finetuning (SFT) serves as an effective way to adapt such foundation models for task-specific downstream tasks but at the cost of degrading the general knowledge previously stored in the original foundation model. To address this, we propose SAM-Med3D-MoE, a novel framework that seamlessly integrates task-specific finetuned models with the foundational model, creating a unified model at minimal additional training expense for an extra gating network.
1 code implementation • 8 Jun 2024 • Yiqing Shen, Zan Chen, Michail Mamalakis, Luhan He, Haiyang Xia, Tianbin Li, Yanzhou Su, Junjun He, Yu Guang Wang
The parallels between protein sequences and natural language in their sequential structures have inspired the application of large language models (LLMs) to protein understanding.
1 code implementation • CVPR 2024 • Yutao Hu, Tianbin Li, Quanfeng Lu, Wenqi Shao, Junjun He, Yu Qiao, Ping Luo
Importantly, all images in this benchmark are sourced from authentic medical scenarios, ensuring alignment with the requirements of the medical field and suitability for evaluating LVLMs.
no code implementations • 7 Dec 2023 • Pengcheng Chen, Ziyan Huang, Zhongying Deng, Tianbin Li, Yanzhou Su, Haoyu Wang, Jin Ye, Yu Qiao, Junjun He
OpenAI's latest large vision-language model (LVLM), GPT-4V(ision), has piqued considerable interest for its potential in medical applications.
1 code implementation • 20 Nov 2023 • Jin Ye, Junlong Cheng, Jianpin Chen, Zhongying Deng, Tianbin Li, Haoyu Wang, Yanzhou Su, Ziyan Huang, Jilong Chen, Lei Jiang, Hui Sun, Min Zhu, Shaoting Zhang, Junjun He, Yu Qiao
Segment Anything Model (SAM) has achieved impressive results for natural image segmentation with input prompts such as points and bounding boxes.
1 code implementation • 23 Oct 2023 • Haoyu Wang, Sizheng Guo, Jin Ye, Zhongying Deng, Junlong Cheng, Tianbin Li, Jianpin Chen, Yanzhou Su, Ziyan Huang, Yiqing Shen, Bin Fu, Shaoting Zhang, Junjun He, Yu Qiao
In this paper, we introduce SAM-Med3D for general-purpose segmentation on volumetric medical images.
2 code implementations • 7 Sep 2023 • Ziyan Huang, Zhongying Deng, Jin Ye, Haoyu Wang, Yanzhou Su, Tianbin Li, Hui Sun, Junlong Cheng, Jianpin Chen, Junjun He, Yun Gu, Shaoting Zhang, Lixu Gu, Yu Qiao
To address these questions, we introduce A-Eval, a benchmark for the cross-dataset Evaluation ('Eval') of Abdominal ('A') multi-organ segmentation.
3 code implementations • 30 Aug 2023 • Junlong Cheng, Jin Ye, Zhongying Deng, Jianpin Chen, Tianbin Li, Haoyu Wang, Yanzhou Su, Ziyan Huang, Jilong Chen, Lei Jiang, Hui Sun, Junjun He, Shaoting Zhang, Min Zhu, Yu Qiao
To bridge this gap, we introduce SAM-Med2D, the most comprehensive studies on applying SAM to medical 2D images.