Search Results for author: Tianbin Li

Found 16 papers, 10 papers with code

OphCLIP: Hierarchical Retrieval-Augmented Learning for Ophthalmic Surgical Video-Language Pretraining

no code implementations23 Nov 2024 Ming Hu, Kun Yuan, Yaling Shen, Feilong Tang, Xiaohao Xu, Lin Zhou, Wei Li, Ying Chen, Zhongxing Xu, Zelin Peng, Siyuan Yan, Vinkle Srivastav, Diping Song, Tianbin Li, Danli Shi, Jin Ye, Nicolas Padoy, Nassir Navab, Junjun He, ZongYuan Ge

Surgical practice involves complex visual interpretation, procedural skills, and advanced medical knowledge, making surgical vision-language pretraining (VLP) particularly challenging due to this complexity and the limited availability of annotated data.

Representation Learning Retrieval

GMAI-VL & GMAI-VL-5.5M: A Large Vision-Language Model and A Comprehensive Multimodal Dataset Towards General Medical AI

1 code implementation21 Nov 2024 Tianbin Li, Yanzhou Su, Wei Li, Bin Fu, Zhe Chen, Ziyan Huang, Guoan Wang, Chenglong Ma, Ying Chen, Ming Hu, Yanjun Li, Pengcheng Chen, Xiaowei Hu, Zhongying Deng, Yuanfeng Ji, Jin Ye, Yu Qiao, Junjun He

Despite significant advancements in general artificial intelligence, such as GPT-4, their effectiveness in the medical domain (general medical AI, GMAI) remains constrained due to the absence of specialized medical knowledge.

Decision Making Language Modeling +3

Interactive Medical Image Segmentation: A Benchmark Dataset and Baseline

1 code implementation19 Nov 2024 Junlong Cheng, Bin Fu, Jin Ye, Guoan Wang, Tianbin Li, Haoyu Wang, Ruoyu Li, He Yao, Junren Chen, Jingwen Li, Yanzhou Su, Min Zhu, Junjun He

To facilitate research on foundational models in medical computer vision, we release the IMed-361M and model at https://github. com/uni-medical/IMIS-Bench.

Image Segmentation Interactive Segmentation +4

SlideChat: A Large Vision-Language Assistant for Whole-Slide Pathology Image Understanding

no code implementations15 Oct 2024 Ying Chen, Guoan Wang, Yuanfeng Ji, Yanjun Li, Jin Ye, Tianbin Li, Bin Zhang, Nana Pei, Rongshan Yu, Yu Qiao, Junjun He

We will fully release SlideChat, SlideInstruction and SlideBench as open-source resources to facilitate research and development in computational pathology.

Instruction Following Visual Question Answering (VQA) +1

A Survey for Large Language Models in Biomedicine

no code implementations29 Aug 2024 Chong Wang, Mengyao Li, Junjun He, Zhongruo Wang, Erfan Darzi, Zan Chen, Jin Ye, Tianbin Li, Yanzhou Su, Jing Ke, Kaili Qu, Shuxin Li, Yi Yu, Pietro Liò, Tianyun Wang, Yu Guang Wang, Yiqing Shen

To address these challenges, we also identify future research directions of LLM in biomedicine including federated learning methods to preserve data privacy and integrating explainable AI methodologies to enhance the transparency of LLMs.

Drug Discovery Ethics +5

TourSynbio: A Multi-Modal Large Model and Agent Framework to Bridge Text and Protein Sequences for Protein Engineering

1 code implementation27 Aug 2024 Yiqing Shen, Zan Chen, Michail Mamalakis, Yungeng Liu, Tianbin Li, Yanzhou Su, Junjun He, Pietro Liò, Yu Guang Wang

While large language models (LLMs) have achieved much progress in the domain of natural language processing, their potential in protein engineering remains largely unexplored.

Multiple-choice Protein Folding

SAM-Med3D-MoE: Towards a Non-Forgetting Segment Anything Model via Mixture of Experts for 3D Medical Image Segmentation

no code implementations6 Jul 2024 Guoan Wang, Jin Ye, Junlong Cheng, Tianbin Li, Zhaolin Chen, Jianfei Cai, Junjun He, Bohan Zhuang

Supervised Finetuning (SFT) serves as an effective way to adapt such foundation models for task-specific downstream tasks but at the cost of degrading the general knowledge previously stored in the original foundation model. To address this, we propose SAM-Med3D-MoE, a novel framework that seamlessly integrates task-specific finetuned models with the foundational model, creating a unified model at minimal additional training expense for an extra gating network.

General Knowledge Image Segmentation +3

A Fine-tuning Dataset and Benchmark for Large Language Models for Protein Understanding

1 code implementation8 Jun 2024 Yiqing Shen, Zan Chen, Michail Mamalakis, Luhan He, Haiyang Xia, Tianbin Li, Yanzhou Su, Junjun He, Yu Guang Wang

The parallels between protein sequences and natural language in their sequential structures have inspired the application of large language models (LLMs) to protein understanding.

Descriptive Language Modelling +2

OmniMedVQA: A New Large-Scale Comprehensive Evaluation Benchmark for Medical LVLM

1 code implementation CVPR 2024 Yutao Hu, Tianbin Li, Quanfeng Lu, Wenqi Shao, Junjun He, Yu Qiao, Ping Luo

Importantly, all images in this benchmark are sourced from authentic medical scenarios, ensuring alignment with the requirements of the medical field and suitability for evaluating LVLMs.

Medical Visual Question Answering Question Answering +1

A-Eval: A Benchmark for Cross-Dataset Evaluation of Abdominal Multi-Organ Segmentation

2 code implementations7 Sep 2023 Ziyan Huang, Zhongying Deng, Jin Ye, Haoyu Wang, Yanzhou Su, Tianbin Li, Hui Sun, Junlong Cheng, Jianpin Chen, Junjun He, Yun Gu, Shaoting Zhang, Lixu Gu, Yu Qiao

To address these questions, we introduce A-Eval, a benchmark for the cross-dataset Evaluation ('Eval') of Abdominal ('A') multi-organ segmentation.

Organ Segmentation Segmentation

SAM-Med2D

3 code implementations30 Aug 2023 Junlong Cheng, Jin Ye, Zhongying Deng, Jianpin Chen, Tianbin Li, Haoyu Wang, Yanzhou Su, Ziyan Huang, Jilong Chen, Lei Jiang, Hui Sun, Junjun He, Shaoting Zhang, Min Zhu, Yu Qiao

To bridge this gap, we introduce SAM-Med2D, the most comprehensive studies on applying SAM to medical 2D images.

Decoder Image Segmentation +4

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