no code implementations • 28 Mar 2022 • Yuanqi Du, Tianfan Fu, Jimeng Sun, Shengchao Liu
Recently, with the rapid development of machine learning methods, especially generative methods, molecule design has achieved great progress by leveraging machine learning models to generate candidate molecules.
no code implementations • ICLR 2022 • Tianfan Fu, Wenhao Gao, Cao Xiao, Jacob Yasonik, Connor W. Coley, Jimeng Sun
The structural design of functional molecules, also called molecular optimization, is an essential chemical science and engineering task with important applications, such as drug discovery.
no code implementations • 22 Sep 2021 • Tianfan Fu, Wenhao Gao, Cao Xiao, Jacob Yasonik, Connor W. Coley, Jimeng Sun
The structural design of functional molecules, also called molecular optimization, is an essential chemical science and engineering task with important applications, such as drug discovery.
2 code implementations • 18 Feb 2021 • Kexin Huang, Tianfan Fu, Wenhao Gao, Yue Zhao, Yusuf Roohani, Jure Leskovec, Connor W. Coley, Cao Xiao, Jimeng Sun, Marinka Zitnik
Here, we introduce Therapeutics Data Commons (TDC), the first unifying platform to systematically access and evaluate machine learning across the entire range of therapeutics.
1 code implementation • 8 Feb 2021 • Tianfan Fu, Kexin Huang, Cao Xiao, Lucas M. Glass, Jimeng Sun
Next, these embeddings will be fed into the knowledge embedding module to generate knowledge embeddings that are pretrained using external knowledge on pharmaco-kinetic properties and trial risk from the web.
1 code implementation • 5 Oct 2020 • Kexin Huang, Tianfan Fu, Dawood Khan, Ali Abid, Ali Abdalla, Abubakar Abid, Lucas M. Glass, Marinka Zitnik, Cao Xiao, Jimeng Sun
The efficacy of a drug depends on its binding affinity to the therapeutic target and pharmacokinetics.
1 code implementation • 5 Oct 2020 • Tianfan Fu, Cao Xiao, Xinhao Li, Lucas M. Glass, Jimeng Sun
Molecule optimization is a fundamental task for accelerating drug discovery, with the goal of generating new valid molecules that maximize multiple drug properties while maintaining similarity to the input molecule.
2 code implementations • 19 Apr 2020 • Kexin Huang, Tianfan Fu, Lucas Glass, Marinka Zitnik, Cao Xiao, Jimeng Sun
Accurate prediction of drug-target interactions (DTI) is crucial for drug discovery.
1 code implementation • 23 Nov 2019 • Tianfan Fu, Cao Xiao, Jimeng Sun
The state-of-the-art approaches partition the molecules into a large set of substructures $S$ and grow the new molecule structure by iteratively predicting which substructure from $S$ to add.
no code implementations • CONLL 2018 • Tianfan Fu, Cheng Zhang, M, Stephan t
In this paper, we present an efficient method for including new words from a specialized corpus, containing new words, into pre-trained generic word embeddings.