Search Results for author: Tyler Derr

Found 39 papers, 23 papers with code

WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking

no code implementations14 Nov 2024 Yunchao, Liu, Ha Dong, Xin Wang, Rocco Moretti, Yu Wang, Zhaoqian Su, Jiawei Gu, Bobby Bodenheimer, Charles David Weaver, Jens Meiler, Tyler Derr

While deep learning has revolutionized computer-aided drug discovery, the AI community has predominantly focused on model innovation and placed less emphasis on establishing best benchmarking practices.

Benchmarking Drug Discovery

Large Language Model-based Augmentation for Imbalanced Node Classification on Text-Attributed Graphs

no code implementations22 Oct 2024 Leyao Wang, Yu Wang, Bo Ni, Yuying Zhao, Tyler Derr

Node classification on graphs frequently encounters the challenge of class imbalance, leading to biased performance and posing significant risks in real-world applications.

Data Augmentation Language Modelling +3

Towards Trustworthy Knowledge Graph Reasoning: An Uncertainty Aware Perspective

no code implementations11 Oct 2024 Bo Ni, Yu Wang, Lu Cheng, Erik Blasch, Tyler Derr

We design an uncertainty-aware multi-step reasoning framework that leverages conformal prediction to provide a theoretical guarantee on the prediction set.

Conformal Prediction Knowledge Graphs +2

A Survey of Mamba

no code implementations2 Aug 2024 Haohao Qu, Liangbo Ning, Rui An, Wenqi Fan, Tyler Derr, Hui Liu, Xin Xu, Qing Li

In this survey, we therefore conduct an in-depth investigation of recent Mamba-associated studies, covering three main aspects: the advancements of Mamba-based models, the techniques of adapting Mamba to diverse data, and the applications where Mamba can excel.

Mamba State Space Models +1

Edge Classification on Graphs: New Directions in Topological Imbalance

1 code implementation17 Jun 2024 Xueqi Cheng, Yu Wang, Yunchao Liu, Yuying Zhao, Charu C. Aggarwal, Tyler Derr

Our empirical studies confirm that TE effectively measures local class distribution variance, and indicate that prioritizing edges with high TE values can help address the issue of topological imbalance.

Edge Classification Graph Classification +2

Large Generative Graph Models

no code implementations7 Jun 2024 Yu Wang, Ryan A. Rossi, Namyong Park, Huiyuan Chen, Nesreen K. Ahmed, Puja Trivedi, Franck Dernoncourt, Danai Koutra, Tyler Derr

To remedy this crucial gap, we propose a new class of graph generative model called Large Graph Generative Model (LGGM) that is trained on a large corpus of graphs (over 5000 graphs) from 13 different domains.

Language Modelling World Knowledge

Augmenting Textual Generation via Topology Aware Retrieval

no code implementations27 May 2024 Yu Wang, Nedim Lipka, Ruiyi Zhang, Alexa Siu, Yuying Zhao, Bo Ni, Xin Wang, Ryan Rossi, Tyler Derr

This framework includes a retrieval module that selects texts based on their topological relationships and an aggregation module that integrates these texts into prompts to stimulate LLMs for text generation.

RAG Retrieval +1

Can One Embedding Fit All? A Multi-Interest Learning Paradigm Towards Improving User Interest Diversity Fairness

no code implementations21 Feb 2024 Yuying Zhao, Minghua Xu, Huiyuan Chen, Yuzhong Chen, Yiwei Cai, Rashidul Islam, Yu Wang, Tyler Derr

Recommender systems (RSs) have gained widespread applications across various domains owing to the superior ability to capture users' interests.

Diversity Fairness +1

Leveraging Opposite Gender Interaction Ratio as a Path towards Fairness in Online Dating Recommendations Based on User Sexual Orientation

no code implementations19 Feb 2024 Yuying Zhao, Yu Wang, Yi Zhang, Pamela Wisniewski, Charu Aggarwal, Tyler Derr

While recommender systems have been designed to improve the user experience in dating platforms by providing personalized recommendations, increasing concerns about fairness have encouraged the development of fairness-aware recommender systems from various perspectives (e. g., gender and race).

Fairness Recommendation Systems +1

Knowledge Graph-based Session Recommendation with Adaptive Propagation

no code implementations17 Feb 2024 Yu Wang, Amin Javari, Janani Balaji, Walid Shalaby, Tyler Derr, Xiquan Cui

Then, we adaptively aggregate items' neighbor information considering user intention within the learned session.

Recommendation Systems

Robust Graph Neural Networks via Unbiased Aggregation

1 code implementation25 Nov 2023 Zhichao Hou, Ruiqi Feng, Tyler Derr, Xiaorui Liu

The adversarial robustness of Graph Neural Networks (GNNs) has been questioned due to the false sense of security uncovered by strong adaptive attacks despite the existence of numerous defenses.

Adversarial Robustness

Enhanced Graph Neural Networks with Ego-Centric Spectral Subgraph Embeddings Augmentation

1 code implementation10 Oct 2023 Anwar Said, Mudassir Shabbir, Tyler Derr, Waseem Abbas, Xenofon Koutsoukos

The superior performance of GNNs often correlates with the availability and quality of node-level features in the input networks.

Graph Classification Graph Embedding +1

A Topological Perspective on Demystifying GNN-Based Link Prediction Performance

1 code implementation6 Oct 2023 Yu Wang, Tong Zhao, Yuying Zhao, Yunchao Liu, Xueqi Cheng, Neil Shah, Tyler Derr

Despite the widespread belief that low-degree nodes exhibit poorer LP performance, our empirical findings provide nuances to this viewpoint and prompt us to propose a better metric, Topological Concentration (TC), based on the intersection of the local subgraph of each node with the ones of its neighbors.

Link Prediction

A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applications

1 code implementation31 Aug 2023 Yi Zhang, Yuying Zhao, Zhaoqing Li, Xueqi Cheng, Yu Wang, Olivera Kotevska, Philip S. Yu, Tyler Derr

Despite this progress, there is a lack of a comprehensive overview of the attacks and the techniques for preserving privacy in the graph domain.

Privacy Preserving

A Survey of Graph Unlearning

no code implementations23 Aug 2023 Anwar Said, Yuying Zhao, Tyler Derr, Mudassir Shabbir, Waseem Abbas, Xenofon Koutsoukos

By laying a solid foundation and fostering continued progress, this survey seeks to inspire researchers to further advance the field of graph unlearning, thereby instilling confidence in the ethical growth of AI systems and reinforcing the responsible application of machine learning techniques in various domains.

Privacy Preserving Recommendation Systems +1

Knowledge Graph Prompting for Multi-Document Question Answering

1 code implementation22 Aug 2023 Yu Wang, Nedim Lipka, Ryan A. Rossi, Alexa Siu, Ruiyi Zhang, Tyler Derr

Concurrently, the graph traversal agent acts as a local navigator that gathers pertinent context to progressively approach the question and guarantee retrieval quality.

graph construction Open-Domain Question Answering +1

Fairness and Diversity in Recommender Systems: A Survey

no code implementations10 Jul 2023 Yuying Zhao, Yu Wang, Yunchao Liu, Xueqi Cheng, Charu Aggarwal, Tyler Derr

Additionally, motivated by the concepts of user-level and item-level fairness, we broaden the understanding of diversity to encompass not only the item level but also the user level.

Diversity Fairness +2

NeuroGraph: Benchmarks for Graph Machine Learning in Brain Connectomics

1 code implementation NeurIPS 2023 Anwar Said, Roza G. Bayrak, Tyler Derr, Mudassir Shabbir, Daniel Moyer, Catie Chang, Xenofon Koutsoukos

We delve deeply into the dataset generation search space by crafting 35 datasets that encompass static and dynamic brain connectivity, running in excess of 15 baseline methods for benchmarking.

Benchmarking

Fairness and Explainability: Bridging the Gap Towards Fair Model Explanations

1 code implementation7 Dec 2022 Yuying Zhao, Yu Wang, Tyler Derr

Although research efforts have been devoted to measuring and mitigating bias, they mainly study bias from the result-oriented perspective while neglecting the bias encoded in the decision-making procedure.

Decision Making Fairness

Collaboration-Aware Graph Convolutional Network for Recommender Systems

1 code implementation3 Jul 2022 Yu Wang, Yuying Zhao, Yi Zhang, Tyler Derr

Graph Neural Networks (GNNs) have been successfully adopted in recommender systems by virtue of the message-passing that implicitly captures collaborative effect.

Recommendation Systems

On Structural Explanation of Bias in Graph Neural Networks

1 code implementation24 Jun 2022 Yushun Dong, Song Wang, Yu Wang, Tyler Derr, Jundong Li

The low transparency on how the structure of the input network influences the bias in GNN outcome largely limits the safe adoption of GNNs in various decision-critical scenarios.

Decision Making Fairness

Improving Fairness in Graph Neural Networks via Mitigating Sensitive Attribute Leakage

1 code implementation7 Jun 2022 Yu Wang, Yuying Zhao, Yushun Dong, Huiyuan Chen, Jundong Li, Tyler Derr

Motivated by our analysis, we propose Fair View Graph Neural Network (FairVGNN) to generate fair views of features by automatically identifying and masking sensitive-correlated features considering correlation variation after feature propagation.

Attribute Fairness +2

ChemicalX: A Deep Learning Library for Drug Pair Scoring

2 code implementations10 Feb 2022 Benedek Rozemberczki, Charles Tapley Hoyt, Anna Gogleva, Piotr Grabowski, Klas Karis, Andrej Lamov, Andriy Nikolov, Sebastian Nilsson, Michael Ughetto, Yu Wang, Tyler Derr, Benjamin M Gyori

In this paper, we introduce ChemicalX, a PyTorch-based deep learning library designed for providing a range of state of the art models to solve the drug pair scoring task.

BIG-bench Machine Learning Deep Learning

Imbalanced Graph Classification via Graph-of-Graph Neural Networks

2 code implementations1 Dec 2021 Yu Wang, Yuying Zhao, Neil Shah, Tyler Derr

To this end, we introduce a novel framework, Graph-of-Graph Neural Networks (G$^2$GNN), which alleviates the graph imbalance issue by deriving extra supervision globally from neighboring graphs and locally from stochastic augmentations of graphs.

Graph Classification Node Classification

Distance-wise Prototypical Graph Neural Network in Node Imbalance Classification

1 code implementation22 Oct 2021 Yu Wang, Charu Aggarwal, Tyler Derr

Recent years have witnessed the significant success of applying graph neural networks (GNNs) in learning effective node representations for classification.

Classification Graph Neural Network +3

Tree Decomposed Graph Neural Network

1 code implementation25 Aug 2021 Yu Wang, Tyler Derr

Nevertheless, iterative propagation restricts the information of higher-layer neighborhoods to be transported through and fused with the lower-layer neighborhoods', which unavoidably results in feature smoothing between neighborhoods in different layers and can thus compromise the performance, especially on heterophily networks.

Graph Neural Network Node Classification +1

Interpretable Visual Understanding with Cognitive Attention Network

1 code implementation6 Aug 2021 Xuejiao Tang, Wenbin Zhang, Yi Yu, Kea Turner, Tyler Derr, Mengyu Wang, Eirini Ntoutsi

While image understanding on recognition-level has achieved remarkable advancements, reliable visual scene understanding requires comprehensive image understanding on recognition-level but also cognition-level, which calls for exploiting the multi-source information as well as learning different levels of understanding and extensive commonsense knowledge.

Scene Understanding Visual Commonsense Reasoning

Graph Feature Gating Networks

no code implementations10 May 2021 Wei Jin, Xiaorui Liu, Yao Ma, Tyler Derr, Charu Aggarwal, Jiliang Tang

Graph neural networks (GNNs) have received tremendous attention due to their power in learning effective representations for graphs.

Denoising

Node Similarity Preserving Graph Convolutional Networks

1 code implementation19 Nov 2020 Wei Jin, Tyler Derr, Yiqi Wang, Yao Ma, Zitao Liu, Jiliang Tang

Specifically, to balance information from graph structure and node features, we propose a feature similarity preserving aggregation which adaptively integrates graph structure and node features.

Graph Representation Learning Self-Supervised Learning

Chat as Expected: Learning to Manipulate Black-box Neural Dialogue Models

no code implementations27 May 2020 Haochen Liu, Zhiwei Wang, Tyler Derr, Jiliang Tang

Recently, neural network based dialogue systems have become ubiquitous in our increasingly digitalized society.

Attacking Black-box Recommendations via Copying Cross-domain User Profiles

1 code implementation17 May 2020 Wenqi Fan, Tyler Derr, Xiangyu Zhao, Yao Ma, Hui Liu, Jian-Ping Wang, Jiliang Tang, Qing Li

In this work, we present our framework CopyAttack, which is a reinforcement learning based black-box attack method that harnesses real users from a source domain by copying their profiles into the target domain with the goal of promoting a subset of items.

Data Poisoning Deep Learning +1

Characterizing the Decision Boundary of Deep Neural Networks

1 code implementation24 Dec 2019 Hamid Karimi, Tyler Derr, Jiliang Tang

In this regard, one crucial aspect of deep neural network classifiers that can help us deepen our knowledge about their decision-making behavior is to investigate their decision boundaries.

Decision Making

Say What I Want: Towards the Dark Side of Neural Dialogue Models

no code implementations13 Sep 2019 Haochen Liu, Tyler Derr, Zitao Liu, Jiliang Tang

Neural dialogue models have been widely adopted in various chatbot applications because of their good performance in simulating and generalizing human conversations.

Chatbot Reinforcement Learning +1

Attacking Graph Convolutional Networks via Rewiring

no code implementations10 Jun 2019 Yao Ma, Suhang Wang, Tyler Derr, Lingfei Wu, Jiliang Tang

Graph Neural Networks (GNNs) have boosted the performance of many graph related tasks such as node classification and graph classification.

General Classification Graph Classification +2

Deep Adversarial Social Recommendation

2 code implementations30 May 2019 Wenqi Fan, Tyler Derr, Yao Ma, JianPing Wang, Jiliang Tang, Qing Li

Recent years have witnessed rapid developments on social recommendation techniques for improving the performance of recommender systems due to the growing influence of social networks to our daily life.

Recommendation Systems Representation Learning

Deep Adversarial Network Alignment

no code implementations27 Feb 2019 Tyler Derr, Hamid Karimi, Xiaorui Liu, Jiejun Xu, Jiliang Tang

Network alignment, in general, seeks to discover the hidden underlying correspondence between nodes across two (or more) networks when given their network structure.

Graph Embedding Network Embedding

Signed Graph Convolutional Network

2 code implementations ICDM 2018 Tyler Derr, Yao Ma, Jiliang Tang

However, since previous GCN models have primarily focused on unsigned networks (or graphs consisting of only positive links), it is unclear how they could be applied to signed networks due to the challenges presented by negative links.

Social and Information Networks Physics and Society

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