1 code implementation • 5 Feb 2025 • Wen Yan, Qianye Yang, Shiqi Huang, Yipei Wang, Shonit Punwani, Mark Emberton, Vasilis Stavrinides, Yipeng Hu, Dean Barratt
Spatial correspondence can be represented by pairs of segmented regions, such that the image registration networks aim to segment corresponding regions rather than predicting displacement fields or transformation parameters.
1 code implementation • 17 Oct 2024 • Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean Barratt, Yipeng Hu
The distinct properties of the proposed ROI-based correspondence are discussed, in the context of potential benefits in clinical applications following image registration, compared with alternative correspondence-representing approaches, such as those based on sampled displacements and spatial transformation functions.
1 code implementation • 23 Aug 2024 • Tianze Zheng, Ailun Wang, Xu Han, Yu Xia, Xingyuan Xu, Jiawei Zhan, Yu Liu, Yang Chen, Zhi Wang, Xiaojie Wu, Sheng Gong, Wen Yan
A force field is a critical component in molecular dynamics simulations for computational drug discovery.
no code implementations • 8 Jun 2024 • Wen Yan, Tao Zhao
Proportional control can be realized directly through the amplification of analog signals, and it also has the advantage of easy tuning parameters in digital signal control.
1 code implementation • 17 May 2024 • Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean Barratt, Yipeng Hu
The goal of image registration is to establish spatial correspondence between two or more images, traditionally through dense displacement fields (DDFs) or parametric transformations (e. g., rigid, affine, and splines).
1 code implementation • 10 Apr 2024 • Sheng Gong, Yumin Zhang, Zhenliang Mu, Zhichen Pu, Hongyi Wang, Zhiao Yu, Mengyi Chen, Tianze Zheng, Zhi Wang, Lifei Chen, Zhenze Yang, Xiaojie Wu, Shaochen Shi, Weihao Gao, Wen Yan, Liang Xiang
Despite the widespread applications of machine learning force fields (MLFF) in solids and small molecules, there is a notable gap in applying MLFF to simulate liquid electrolyte, a critical component of the current commercial lithium-ion battery.
no code implementations • 21 Feb 2024 • Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
The object-presence classifier may then inform the controller of its localisation quality by quantifying the likelihood of the image containing an object.
no code implementations • 16 Feb 2024 • Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu
For training registration networks, weak supervision from segmented corresponding regions-of-interest (ROIs) have been proven effective for (a) supplementing unsupervised methods, and (b) being used independently in registration tasks in which unsupervised losses are unavailable or ineffective.
no code implementations • 17 Jul 2023 • Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu
One of the distinct characteristics in radiologists' reading of multiparametric prostate MR scans, using reporting systems such as PI-RADS v2. 1, is to score individual types of MR modalities, T2-weighted, diffusion-weighted, and dynamic contrast-enhanced, and then combine these image-modality-specific scores using standardised decision rules to predict the likelihood of clinically significant cancer.
1 code implementation • 5 Jun 2023 • Alexander Bukharin, Tianyi Liu, Shengjie Wang, Simiao Zuo, Weihao Gao, Wen Yan, Tuo Zhao
To address this issue, we propose a multi-stage computational framework -- ASTEROID, which lowers the data cost of MLFFs by leveraging a combination of cheap inaccurate data and expensive accurate data.
no code implementations • 3 Mar 2023 • Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
For the first time, we evaluate the realism of the generated pathology by blind expert identification of the presence of suspected lesions, where we find that the clinician performs similarly for both real and synthesised images, with a 2. 9 percentage point difference in lesion identification accuracy between real and synthesised images, demonstrating the potentials in radiological training purposes.
1 code implementation • 12 Sep 2022 • Yiwen Li, Yunguan Fu, Iani Gayo, Qianye Yang, Zhe Min, Shaheer Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean Barratt, Victor Adrian Prisacariu, Yipeng Hu
The prowess that makes few-shot learning desirable in medical image analysis is the efficient use of the support image data, which are labelled to classify or segment new classes, a task that otherwise requires substantially more training images and expert annotations.
1 code implementation • 26 Jul 2022 • Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
In this work, we consider the task of pairwise cross-modality image registration, which may benefit from exploiting additional images available only at training time from an additional modality that is different to those being registered.
no code implementations • 30 Mar 2022 • Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu
However, the differences in false-positives and false-negatives, between the actual errors and the perceived counterparts if DSC is used, can be as high as 152 and 154, respectively, out of the 357 test set lesions.
1 code implementation • 20 Feb 2022 • Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu
This allows for the trained IQA controller to measure the impact an image has on the target task performance, when this task is performed using the predictor, e. g. segmentation and classification neural networks in modern clinical applications.
no code implementations • 17 Jan 2022 • Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan Huisman, Dean Barratt, Victor Adrian Prisacariu, Yipeng Hu
The ability to adapt medical image segmentation networks for a novel class such as an unseen anatomical or pathological structure, when only a few labelled examples of this class are available from local healthcare providers, is sought-after.
no code implementations • 4 Jun 2021 • Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean Barratt, Yipeng Hu
Prostate cancer (PCa) is one of the leading causes of death for men worldwide.
no code implementations • 23 Nov 2017 • Siyuan Shan, Wen Yan, Xiaoqing Guo, Eric I-Chao Chang, Yubo Fan, Yan Xu
The contributions of our algorithm are threefold: (1) We transplant traditional image registration algorithms to an end-to-end convolutional neural network framework, while maintaining the unsupervised nature of image registration problems.
2 code implementations • 4 May 2017 • Wen Yan, Michael Shelley
An important but missing component in the application of the kernel independent fast multipole method (KIFMM) is the capability for flexibly and efficiently imposing singly, doubly, and triply periodic boundary conditions.
Numerical Analysis