1 code implementation • 12 Jun 2025 • Kangwei Liu, Siyuan Cheng, Bozhong Tian, Xiaozhuan Liang, Yuyang Yin, Meng Han, Ningyu Zhang, Bryan Hooi, Xi Chen, Shumin Deng
In addition, we propose a knowledge-augmented baseline that integrates both human-annotated knowledge rules and implicit knowledge from large language models, enabling smaller models to achieve performance comparable to state-of-the-art LLMs.
no code implementations • 31 Oct 2024 • Liang He, Peiran Jin, Yaosen Min, Shufang Xie, Lijun Wu, Tao Qin, Xiaozhuan Liang, Kaiyuan Gao, Yuliang Jiang, Tie-Yan Liu
Proteins, essential to biological systems, perform functions intricately linked to their three-dimensional structures.
1 code implementation • 2 Jul 2024 • Bozhong Tian, Xiaozhuan Liang, Siyuan Cheng, Qingbin Liu, Mengru Wang, Dianbo Sui, Xi Chen, Huajun Chen, Ningyu Zhang
Large Language Models (LLMs) trained on extensive corpora inevitably retain sensitive data, such as personal privacy information and copyrighted material.
1 code implementation • 27 Feb 2024 • Qizhi Pei, Lijun Wu, Kaiyuan Gao, Xiaozhuan Liang, Yin Fang, Jinhua Zhu, Shufang Xie, Tao Qin, Rui Yan
However, previous efforts like BioT5 faced challenges in generalizing across diverse tasks and lacked a nuanced understanding of molecular structures, particularly in their textual representations (e. g., IUPAC).
Ranked #2 on
Retrosynthesis
on Mol-Instruction
1 code implementation • 25 Feb 2024 • Ningyu Zhang, Bozhong Tian, Siyuan Cheng, Xiaozhuan Liang, Yi Hu, Kouying Xue, Yanjie Gou, Xi Chen, Huajun Chen
Knowledge editing for large language models can offer an efficient solution to alter a model's behavior without negatively impacting the overall performance.
1 code implementation • 13 Jun 2023 • Yin Fang, Xiaozhuan Liang, Ningyu Zhang, Kangwei Liu, Rui Huang, Zhuo Chen, Xiaohui Fan, Huajun Chen
Large Language Models (LLMs), with their remarkable task-handling capabilities and innovative outputs, have catalyzed significant advancements across a spectrum of fields.
Catalytic activity prediction
Chemical-Disease Interaction Extraction
+14
2 code implementations • 1 Oct 2022 • Ningyu Zhang, Lei LI, Xiang Chen, Xiaozhuan Liang, Shumin Deng, Huajun Chen
Analogical reasoning is fundamental to human cognition and holds an important place in various fields.
2 code implementations • 29 May 2022 • Xiang Chen, Lei LI, Ningyu Zhang, Xiaozhuan Liang, Shumin Deng, Chuanqi Tan, Fei Huang, Luo Si, Huajun Chen
Specifically, vanilla prompt learning may struggle to utilize atypical instances by rote during fully-supervised training or overfit shallow patterns with low-shot data.
no code implementations • 27 May 2022 • Siyuan Cheng, Xiaozhuan Liang, Zhen Bi, Huajun Chen, Ningyu Zhang
Existing data-centric methods for protein science generally cannot sufficiently capture and leverage biology knowledge, which may be crucial for many protein tasks.
1 code implementation • 22 May 2022 • Zhen Bi, Siyuan Cheng, Jing Chen, Xiaozhuan Liang, Feiyu Xiong, Ningyu Zhang
To this end, we propose a new variant of Transformer for knowledge graph representations dubbed Relphormer.
Ranked #3 on
Link Prediction
on FB15k-237
1 code implementation • 9 Apr 2022 • Xiaozhuan Liang, Ningyu Zhang, Siyuan Cheng, Zhenru Zhang, Chuanqi Tan, Huajun Chen
Pretrained language models can be effectively stimulated by textual prompts or demonstrations, especially in low-data scenarios.
1 code implementation • ICLR 2022 • Ningyu Zhang, Zhen Bi, Xiaozhuan Liang, Siyuan Cheng, Haosen Hong, Shumin Deng, Jiazhang Lian, Qiang Zhang, Huajun Chen
We construct a novel large-scale knowledge graph that consists of GO and its related proteins, and gene annotation texts or protein sequences describe all nodes in the graph.
1 code implementation • 10 Jan 2022 • Ningyu Zhang, Xin Xu, Liankuan Tao, Haiyang Yu, Hongbin Ye, Shuofei Qiao, Xin Xie, Xiang Chen, Zhoubo Li, Lei LI, Xiaozhuan Liang, Yunzhi Yao, Shumin Deng, Peng Wang, Wen Zhang, Zhenru Zhang, Chuanqi Tan, Qiang Chen, Feiyu Xiong, Fei Huang, Guozhou Zheng, Huajun Chen
We present an open-source and extensible knowledge extraction toolkit DeepKE, supporting complicated low-resource, document-level and multimodal scenarios in the knowledge base population.
2 code implementations • ACL 2022 • Ningyu Zhang, Mosha Chen, Zhen Bi, Xiaozhuan Liang, Lei LI, Xin Shang, Kangping Yin, Chuanqi Tan, Jian Xu, Fei Huang, Luo Si, Yuan Ni, Guotong Xie, Zhifang Sui, Baobao Chang, Hui Zong, Zheng Yuan, Linfeng Li, Jun Yan, Hongying Zan, Kunli Zhang, Buzhou Tang, Qingcai Chen
Artificial Intelligence (AI), along with the recent progress in biomedical language understanding, is gradually changing medical practice.
Ranked #1 on
Semantic Similarity
on CHIP-STS