1 code implementation • LREC 2022 • Xindi Wang, Robert E. Mercer, Frank Rudzicz
Medical Subject Heading (MeSH) indexing refers to the problem of assigning a given biomedical document with the most relevant labels from an extremely large set of MeSH terms.
no code implementations • 25 Sep 2024 • Yishu Wei, Xindi Wang, Hanley Ong, Yiliang Zhou, Adam Flanders, George Shih, Yifan Peng
These findings demonstrate the potential of fine-tuning LLMs with synthetic labels, offering a promising direction for future research on LLM specialization in the medical domain.
no code implementations • 29 May 2024 • Xindi Wang, Robert E. Mercer, Frank Rudzicz
In this paper, we leverage a multi-stage ``retrieve and re-rank'' framework as a novel solution to ICD indexing, via a hybrid discrete retrieval method, and re-rank retrieved candidates with contrastive learning that allows the model to make more accurate predictions from a simplified label space.
no code implementations • 29 May 2024 • Xindi Wang, Robert E. Mercer, Frank Rudzicz
The International Classification of Diseases (ICD) is an authoritative medical classification system of different diseases and conditions for clinical and management purposes.
no code implementations • 3 Feb 2024 • Xindi Wang, Mahsa Salmani, Parsa Omidi, Xiangyu Ren, Mehdi Rezagholizadeh, Armaghan Eshaghi
Recently, large language models (LLMs) have shown remarkable capabilities including understanding context, engaging in logical reasoning, and generating responses.
1 code implementation • 28 Jul 2023 • Xindi Wang, YuFei Wang, Can Xu, Xiubo Geng, BoWen Zhang, Chongyang Tao, Frank Rudzicz, Robert E. Mercer, Daxin Jiang
Large language models (LLMs) have shown remarkable capacity for in-context learning (ICL), where learning a new task from just a few training examples is done without being explicitly pre-trained.
no code implementations • 28 Apr 2022 • Xindi Wang, Robert E. Mercer, Frank Rudzicz
Medical Subject Heading (MeSH) indexing refers to the problem of assigning a given biomedical document with the most relevant labels from an extremely large set of MeSH terms.
1 code implementation • ACL 2022 • Xindi Wang, Robert E. Mercer, Frank Rudzicz
Currently, Medical Subject Headings (MeSH) are manually assigned to every biomedical article published and subsequently recorded in the PubMed database to facilitate retrieving relevant information.
1 code implementation • EMNLP (ClinicalNLP) 2020 • John Chen, Ian Berlot-Attwell, Safwan Hossain, Xindi Wang, Frank Rudzicz
Clinical machine learning is increasingly multimodal, collected in both structured tabular formats and unstructured forms such as freetext.
1 code implementation • 20 Dec 2019 • John Giorgi, Xindi Wang, Nicola Sahar, Won Young Shin, Gary D. Bader, Bo wang
In this paper, we propose a neural, end-to-end model for jointly extracting entities and their relations which does not rely on external NLP tools and which integrates a large, pre-trained language model.
1 code implementation • 13 Aug 2019 • Xindi Wang, Onur Varol, Tina Eliassi-Rad
In its placing phase, L2P obtains a prediction by placing the new instance among the known instances.
1 code implementation • WS 2019 • Xindi Wang, Robert E. Mercer
The goal of text classification is to automatically assign categories to documents.
no code implementations • 27 Jun 2017 • Xindi Wang, Syed Arefinul Haque
In this paper we cluster 330 classical music pieces collected from MusicNet database based on their musical note sequence.