Search Results for author: Xingru Huang

Found 6 papers, 4 papers with code

Practical Guidelines for Cell Segmentation Models Under Optical Aberrations in Microscopy

no code implementations12 Apr 2024 Boyuan Peng, Jiaju Chen, P. Bilha Githinji, Ijaz Gul, Qihui Ye, Minjiang Chen, Peiwu Qin, Xingru Huang, Chenggang Yan, Dongmei Yu, Jiansong Ji, Zhenglin Chen

By simulating different types of aberrations, including astigmatism, coma, spherical aberration, trefoil, and mixed aberrations, we conduct a thorough evaluation of various cell instance segmentation models using the DynamicNuclearNet (DNN) and LIVECell datasets, representing fluorescence and bright field microscopy cell datasets, respectively.

Benchmarking Cell Segmentation +4

DEFN: Dual-Encoder Fourier Group Harmonics Network for Three-Dimensional Indistinct-Boundary Object Segmentation

2 code implementations1 Nov 2023 Xiaohua Jiang, Yihao Guo, Jian Huang, Yuting Wu, Meiyi Luo, Zhaoyang Xu, Qianni Zhang, Xingru Huang, Hong He, Shaowei Jiang, Jing Ye, Mang Xiao

The precise spatial and quantitative delineation of indistinct-boundary medical objects is paramount for the accuracy of diagnostic protocols, efficacy of surgical interventions, and reliability of postoperative assessments.

3D Reconstruction Data Augmentation +5

Structure-aware scale-adaptive networks for cancer segmentation in whole-slide images

1 code implementation26 Sep 2021 Yibao Sun, Giussepi Lopez, Yaqi Wang, Xingru Huang, Huiyu Zhou, Qianni Zhang

Cancer segmentation in whole-slide images is a fundamental step for viable tumour burden estimation, which is of great value for cancer assessment.

Decoder feature selection +2

Magnification-independent Histopathological Image Classification with Similarity-based Multi-scale Embeddings

1 code implementation2 Jul 2021 Yibao Sun, Xingru Huang, Yaqi Wang, Huiyu Zhou, Qianni Zhang

Experimental results show that the SMSE improves the performance for histopathological image classification tasks for both breast and liver cancers by a large margin compared to previous methods.

Histopathological Image Classification Image Classification +1

SRPN: similarity-based region proposal networks for nuclei and cells detection in histology images

1 code implementation25 Jun 2021 Yibao Sun, Xingru Huang, Huiyu Zhou, Qianni Zhang

The embedding layer is added into the region proposal networks, enabling the networks to learn discriminative features based on similarity learning.

Cell Detection Dense Object Detection +2

GAN-based Virtual Re-Staining: A Promising Solution for Whole Slide Image Analysis

no code implementations13 Jan 2019 Zhaoyang Xu, Xingru Huang, Carlos Fernández Moro, Béla Bozóky, Qianni Zhang

We proposed a conditional CycleGAN (cCGAN) network to transform the H\&E stained images into IHC stained images, facilitating virtual IHC staining on the same slide.

Translation

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