Search Results for author: Yanwen Huang

Found 10 papers, 4 papers with code

PharmAgents: Building a Virtual Pharma with Large Language Model Agents

no code implementations28 Mar 2025 Bowen Gao, Yanwen Huang, Yiqiao Liu, Wenxuan Xie, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan

The discovery of novel small molecule drugs remains a critical scientific challenge with far-reaching implications for treating diseases and advancing human health.

Drug Discovery Language Modeling +2

Pushing the boundaries of Structure-Based Drug Design through Collaboration with Large Language Models

no code implementations3 Mar 2025 Bowen Gao, Yanwen Huang, Yiqiao Liu, Wenxuan Xie, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan

Structure-Based Drug Design (SBDD) has revolutionized drug discovery by enabling the rational design of molecules for specific protein targets.

Drug Design Drug Discovery

Large Language Model as Universal Retriever in Industrial-Scale Recommender System

no code implementations5 Feb 2025 Junguang Jiang, Yanwen Huang, Bin Liu, Xiaoyu Kong, Xinhang Li, Ziru Xu, Han Zhu, Jian Xu, Bo Zheng

In real-world recommender systems, different retrieval objectives are typically addressed using task-specific datasets with carefully designed model architectures.

Prompt Engineering Recommendation Systems

Dynamic Attention-Guided Context Decoding for Mitigating Context Faithfulness Hallucinations in Large Language Models

no code implementations2 Jan 2025 Yanwen Huang, Yong Zhang, Ning Cheng, Zhitao Li, Shaojun Wang, Jing Xiao

Large language models (LLMs) often suffer from context faithfulness hallucinations, where outputs deviate from retrieved information due to insufficient context utilization and high output uncertainty.

Computational Efficiency

MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis

1 code implementation13 Jun 2024 Shikun Feng, Jiaxin Zheng, Yinjun Jia, Yanwen Huang, Fengfeng Zhou, Wei-Ying Ma, Yanyan Lan

We believe this dataset will serve as a more accurate and reliable benchmark for molecular representation learning, thereby expediting progress in the field of artificial intelligence-driven drug discovery.

Drug Discovery Molecular Property Prediction +3

From Theory to Therapy: Reframing SBDD Model Evaluation via Practical Metrics

1 code implementation13 Jun 2024 Bowen Gao, Haichuan Tan, Yanwen Huang, Minsi Ren, Xiao Huang, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan

Recent advancements in structure-based drug design (SBDD) have significantly enhanced the efficiency and precision of drug discovery by generating molecules tailored to bind specific protein pockets.

Drug Design Drug Discovery

SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction

1 code implementation13 Jun 2024 Yanwen Huang, Bowen Gao, Yinjun Jia, Hongbo Ma, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan

Small molecules play a pivotal role in modern medicine, and scrutinizing their interactions with protein targets is essential for the discovery and development of novel, life-saving therapeutics.

Prediction

Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion

no code implementations4 Mar 2024 Bowen Gao, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan

In the field of Structure-based Drug Design (SBDD), deep learning-based generative models have achieved outstanding performance in terms of docking score.

Contrastive Learning Drug Design +1

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