1 code implementation • 14 Feb 2025 • Chris Zhuang, Debadyuti Mukherjee, Yingzhou Lu, Tianfan Fu, Ruqi Zhang
To address this limitation, we propose a novel approach called Gradient Genetic Algorithm (Gradient GA), which incorporates gradient information from the objective function into genetic algorithms.
no code implementations • 9 Dec 2024 • Lincan Li, Jiaqi Li, Catherine Chen, Fred Gui, Hongjia Yang, Chenxiao Yu, Zhengguang Wang, Jianing Cai, Junlong Aaron Zhou, Bolin Shen, Alex Qian, Weixin Chen, Zhongkai Xue, Lichao Sun, Lifang He, Hanjie Chen, Kaize Ding, Zijian Du, Fangzhou Mu, Jiaxin Pei, Jieyu Zhao, Swabha Swayamdipta, Willie Neiswanger, Hua Wei, Xiyang Hu, Shixiang Zhu, Tianlong Chen, Yingzhou Lu, Yang Shi, Lianhui Qin, Tianfan Fu, Zhengzhong Tu, Yuzhe Yang, Jaemin Yoo, Jiaheng Zhang, Ryan Rossi, Liang Zhan, Liang Zhao, Emilio Ferrara, Yan Liu, Furong Huang, Xiangliang Zhang, Lawrence Rothenberg, Shuiwang Ji, Philip S. Yu, Yue Zhao, Yushun Dong
In recent years, large language models (LLMs) have been widely adopted in political science tasks such as election prediction, sentiment analysis, policy impact assessment, and misinformation detection.
no code implementations • 22 Sep 2024 • Bohao Xu, Yingzhou Lu, Yoshitaka Inoue, Namkyeong Lee, Tianfan Fu, Jintai Chen
Protein function prediction is a pivotal task in drug discovery, significantly impacting the development of effective and safe therapeutics.
no code implementations • 11 Aug 2024 • Bohao Xu, Yingzhou Lu, Chenhao Li, Ling Yue, Xiao Wang, Nan Hao, Tianfan Fu, Jim Chen
In drug discovery, predicting the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of small-molecule drugs is critical for ensuring safety and efficacy.
1 code implementation • 5 Aug 2024 • Ling Yue, Sixue Xing, Yingzhou Lu, Tianfan Fu
BioMamba builds upon the Mamba architecture and is pre-trained on an extensive corpus of biomedical literature.
no code implementations • 30 Jul 2024 • Yinlong Xu, Xiaoqiang Liu, Zitai Kong, Yixuan Wu, Yue Wang, Yingzhou Lu, Honghao Gao, Jian Wu, Hongxia Xu
Cardiac arrhythmia, a condition characterized by irregular heartbeats, often serves as an early indication of various heart ailments.
no code implementations • 2 Jul 2024 • Yingzhou Lu, Yaojun Hu, Chenhao Li
Bringing a novel drug from the original idea to market typically requires more than ten years and billions of dollars.
1 code implementation • 30 Jun 2024 • Jintai Chen, Yaojun Hu, Yue Wang, Yingzhou Lu, Xu Cao, Miao Lin, Hongxia Xu, Jian Wu, Cao Xiao, Jimeng Sun, Lucas Glass, Kexin Huang, Marinka Zitnik, Tianfan Fu
Clinical trials are pivotal for developing new medical treatments, yet they typically pose some risks such as patient mortality, adverse events, and enrollment failure that waste immense efforts spanning over a decade.
1 code implementation • 4 Jun 2024 • Kangyu Zheng, Yingzhou Lu, Zaixi Zhang, Zhongwei Wan, Yao Ma, Marinka Zitnik, Tianfan Fu
Currently, the field of structure-based drug design is dominated by three main types of algorithms: search-based algorithms, deep generative models, and reinforcement learning.
no code implementations • 1 Apr 2024 • Yue Wang, Tianfan Fu, Yinlong Xu, Zihan Ma, Hongxia Xu, Yingzhou Lu, Bang Du, Honghao Gao, Jian Wu
Clinical trials are indispensable for medical research and the development of new treatments.
1 code implementation • 7 Jan 2024 • Tianyi Chen, Yingzhou Lu, Nan Hao, Yuanyuan Zhang, Capucine van Rechem, Jintai Chen, Tianfan Fu
Selective classification, encompassing a spectrum of methods for uncertainty quantification, empowers the model to withhold decision-making in the face of samples marked by ambiguity or low confidence, thereby amplifying the accuracy of predictions for the instances it chooses to classify.
1 code implementation • 21 Dec 2023 • Yingzhou Lu, Minjie Shen, Ling Yue, Chenhao Li, Lulu Chen, Fan Meng, Xiao Wang, David Herrington, Yue Wang, Yue Zhao, Tianfan Fu, Capucine van Rechem
With GenoCraft, researchers and data scientists have access to an array of cutting-edge bioinformatics tools under a user-friendly interface, making it a valuable resource for managing and analyzing large-scale omics data.
no code implementations • 8 Feb 2023 • Yingzhou Lu, Minjie Shen, Huazheng Wang, Xiao Wang, Capucine van Rechem, Tianfan Fu, Wenqi Wei
In light of these challenges, the concept of synthetic data generation emerges as a promising alternative that allows for data sharing and utilization in ways that real-world data cannot facilitate.
no code implementations • 10 Jan 2023 • Yingzhou Lu, Kosaku Sato, Jialu Wang
With the rise of internet technology amidst increasing rates of urbanization, sharing information has never been easier thanks to globally-adopted platforms for digital communication.