no code implementations • 11 Oct 2024 • Luoyao Chen, Revant Teotia, Antonio Verdone, Aidan Cardall, Lakshay Tyagi, Yiqiu Shen, Sumit Chopra
This study introduces a pipeline for developing in-house LLMs tailored to identify differential diagnoses from radiology reports.
no code implementations • 21 Aug 2024 • Yuxuan Chen, Haoyan Yang, Hengkai Pan, Fardeen Siddiqui, Antonio Verdone, Qingyang Zhang, Sumit Chopra, Chen Zhao, Yiqiu Shen
We first use GPT-4 to create a small labeled dataset, then fine-tune a Llama3-8B model on it.
no code implementations • 27 May 2024 • Yanqi Xu, Yiqiu Shen, Carlos Fernandez-Granda, Laura Heacock, Krzysztof J. Geras
This study evaluates the applicability of these transformer-based design choices when applied to a screening mammography dataset that represents these distinct medical imaging data characteristics.
no code implementations • 6 Nov 2023 • Yiqiu Shen, Jungkyu Park, Frank Yeung, Eliana Goldberg, Laura Heacock, Farah Shamout, Krzysztof J. Geras
Breast cancer screening, primarily conducted through mammography, is often supplemented with ultrasound for women with dense breast tissue.
2 code implementations • CVPR 2023 • Kangning Liu, Weicheng Zhu, Yiqiu Shen, Sheng Liu, Narges Razavian, Krzysztof J. Geras, Carlos Fernandez-Granda
The framework employs a novel self-paced sampling strategy to ensure the accuracy of pseudo labels.
no code implementations • 13 Nov 2021 • Stanislav Minsker, Mohamed Ndaoud, Yiqiu Shen
Our analysis also shows that interpolation can be robust to corruption in the covariance of the noise when the signal is aligned with the "clean" part of the covariance, for the properly defined notion of alignment.
2 code implementations • CVPR 2022 • Sheng Liu, Kangning Liu, Weicheng Zhu, Yiqiu Shen, Carlos Fernandez-Granda
We discover a phenomenon that has been previously reported in the context of classification: the networks tend to first fit the clean pixel-level labels during an "early-learning" phase, before eventually memorizing the false annotations.
1 code implementation • 13 Jun 2021 • Kangning Liu, Yiqiu Shen, Nan Wu, Jakub Chłędowski, Carlos Fernandez-Granda, Krzysztof J. Geras
In cancer diagnosis, interpretability can be achieved by localizing the region of the input image responsible for the output, i. e. the location of a lesion.
no code implementations • 19 Sep 2020 • Nan Wu, Zhe Huang, Yiqiu Shen, Jungkyu Park, Jason Phang, Taro Makino, S. Gene Kim, Kyunghyun Cho, Laura Heacock, Linda Moy, Krzysztof J. Geras
Breast cancer is the most common cancer in women, and hundreds of thousands of unnecessary biopsies are done around the world at a tremendous cost.
1 code implementation • 4 Aug 2020 • Farah E. Shamout, Yiqiu Shen, Nan Wu, Aakash Kaku, Jungkyu Park, Taro Makino, Stanisław Jastrzębski, Duo Wang, Ben Zhang, Siddhant Dogra, Meng Cao, Narges Razavian, David Kudlowitz, Lea Azour, William Moore, Yvonne W. Lui, Yindalon Aphinyanaphongs, Carlos Fernandez-Granda, Krzysztof J. Geras
In order to verify performance in a real clinical setting, we silently deployed a preliminary version of the deep neural network at New York University Langone Health during the first wave of the pandemic, which produced accurate predictions in real-time.
1 code implementation • 13 Feb 2020 • Yiqiu Shen, Nan Wu, Jason Phang, Jungkyu Park, Kangning Liu, Sudarshini Tyagi, Laura Heacock, S. Gene Kim, Linda Moy, Kyunghyun Cho, Krzysztof J. Geras
In this work, we extend the globally-aware multiple instance classifier, a framework we proposed to address these unique properties of medical images.
no code implementations • 30 Jul 2019 • Jungkyu Park, Jason Phang, Yiqiu Shen, Nan Wu, S. Gene Kim, Linda Moy, Kyunghyun Cho, Krzysztof J. Geras
Radiologists typically compare a patient's most recent breast cancer screening exam to their previous ones in making informed diagnoses.
no code implementations • 7 Jun 2019 • Yiqiu Shen, Nan Wu, Jason Phang, Jungkyu Park, Gene Kim, Linda Moy, Kyunghyun Cho, Krzysztof J. Geras
Moreover, both the global structure and local details play important roles in medical image analysis tasks.
2 code implementations • 20 Mar 2019 • Nan Wu, Jason Phang, Jungkyu Park, Yiqiu Shen, Zhe Huang, Masha Zorin, Stanisław Jastrzębski, Thibault Févry, Joe Katsnelson, Eric Kim, Stacey Wolfson, Ujas Parikh, Sushma Gaddam, Leng Leng Young Lin, Kara Ho, Joshua D. Weinstein, Beatriu Reig, Yiming Gao, Hildegard Toth, Kristine Pysarenko, Alana Lewin, Jiyon Lee, Krystal Airola, Eralda Mema, Stephanie Chung, Esther Hwang, Naziya Samreen, S. Gene Kim, Laura Heacock, Linda Moy, Kyunghyun Cho, Krzysztof J. Geras
We present a deep convolutional neural network for breast cancer screening exam classification, trained and evaluated on over 200, 000 exams (over 1, 000, 000 images).
1 code implementation • 10 Nov 2017 • Nan Wu, Krzysztof J. Geras, Yiqiu Shen, Jingyi Su, S. Gene Kim, Eric Kim, Stacey Wolfson, Linda Moy, Kyunghyun Cho
Breast density classification is an essential part of breast cancer screening.
2 code implementations • 21 Mar 2017 • Krzysztof J. Geras, Stacey Wolfson, Yiqiu Shen, Nan Wu, S. Gene Kim, Eric Kim, Laura Heacock, Ujas Parikh, Linda Moy, Kyunghyun Cho
In our work, we propose to use a multi-view deep convolutional neural network that handles a set of high-resolution medical images.