1 code implementation • 30 Oct 2024 • Yizhen Luo, Zikun Nie, Massimo Hong, Suyuan Zhao, Hao Zhou, Zaiqing Nie
To address these issues, we present MutaPLM, a unified framework for interpreting and navigating protein mutations with protein language models.
1 code implementation • 14 Jun 2024 • Yizhen Luo, Kai Yang, Massimo Hong, Xing Yi Liu, Zikun Nie, Hao Zhou, Zaiqing Nie
To address these issues, we present MV-Mol, a molecular representation learning model that harvests multi-view molecular expertise from chemical structures, unstructured knowledge from biomedical texts, and structured knowledge from knowledge graphs.
3 code implementations • 9 May 2024 • Suyuan Zhao, Jiahuan Zhang, Yushuai Wu, Yizhen Luo, Zaiqing Nie
Cell identity encompasses various semantic aspects of a cell, including cell type, pathway information, disease information, and more, which are essential for biologists to gain insights into its biological characteristics.
no code implementations • 6 Mar 2024 • Ting Zhang, Hao Zhou, Hainan Wu, Hanwen Sunchu, Lei Hu, Xiaofang Chen, Suyuan Zhao, Gaochao liu, Chao Sun, Jiahuan Zhang, Yizhen Luo, Peng Liu, Zaiqing Nie, Yushuai Wu
The fields of therapeutic application and drug research and development (R&D) both face substantial challenges, i. e., the therapeutic domain calls for more treatment alternatives, while numerous promising pre-clinical drugs have failed in clinical trials.
2 code implementations • 6 Jun 2023 • Yizhen Luo, Kai Yang, Massimo Hong, Xing Yi Liu, Zaiqing Nie
In this study, we introduce MolFM, a multimodal molecular foundation model designed to facilitate joint representation learning from molecular structures, biomedical texts, and knowledge graphs.
Ranked #10 on Text-based de novo Molecule Generation on ChEBI-20
no code implementations • 17 Apr 2023 • Yizhen Luo, Xing Yi Liu, Kai Yang, Kui Huang, Massimo Hong, Jiahuan Zhang, Yushuai Wu, Zaiqing Nie
In recent years, AI models that mine intrinsic patterns from molecular structures and protein sequences have shown promise in accelerating drug discovery.
1 code implementation • CVPR 2022 • Haibao Yu, Yizhen Luo, Mao Shu, Yiyi Huo, Zebang Yang, Yifeng Shi, Zhenglong Guo, Hanyu Li, Xing Hu, Jirui Yuan, Zaiqing Nie
Autonomous driving faces great safety challenges for a lack of global perspective and the limitation of long-range perception capabilities.
1 code implementation • 1 Mar 2021 • Yukuo Cen, Zhenyu Hou, Yan Wang, Qibin Chen, Yizhen Luo, Zhongming Yu, Hengrui Zhang, Xingcheng Yao, Aohan Zeng, Shiguang Guo, Yuxiao Dong, Yang Yang, Peng Zhang, Guohao Dai, Yu Wang, Chang Zhou, Hongxia Yang, Jie Tang
In CogDL, we propose a unified design for the training and evaluation of GNN models for various graph tasks, making it unique among existing graph learning libraries.