Search Results for author: Yizhen Luo

Found 8 papers, 6 papers with code

MutaPLM: Protein Language Modeling for Mutation Explanation and Engineering

1 code implementation30 Oct 2024 Yizhen Luo, Zikun Nie, Massimo Hong, Suyuan Zhao, Hao Zhou, Zaiqing Nie

To address these issues, we present MutaPLM, a unified framework for interpreting and navigating protein mutations with protein language models.

Language Modeling Language Modelling +1

Learning Multi-view Molecular Representations with Structured and Unstructured Knowledge

1 code implementation14 Jun 2024 Yizhen Luo, Kai Yang, Massimo Hong, Xing Yi Liu, Zikun Nie, Hao Zhou, Zaiqing Nie

To address these issues, we present MV-Mol, a molecular representation learning model that harvests multi-view molecular expertise from chemical structures, unstructured knowledge from biomedical texts, and structured knowledge from knowledge graphs.

Knowledge Graphs Molecular Property Prediction +3

LangCell: Language-Cell Pre-training for Cell Identity Understanding

3 code implementations9 May 2024 Suyuan Zhao, Jiahuan Zhang, Yushuai Wu, Yizhen Luo, Zaiqing Nie

Cell identity encompasses various semantic aspects of a cell, including cell type, pathway information, disease information, and more, which are essential for biologists to gain insights into its biological characteristics.

DeepCRE: Transforming Drug R&D via AI-Driven Cross-drug Response Evaluation

no code implementations6 Mar 2024 Ting Zhang, Hao Zhou, Hainan Wu, Hanwen Sunchu, Lei Hu, Xiaofang Chen, Suyuan Zhao, Gaochao liu, Chao Sun, Jiahuan Zhang, Yizhen Luo, Peng Liu, Zaiqing Nie, Yushuai Wu

The fields of therapeutic application and drug research and development (R&D) both face substantial challenges, i. e., the therapeutic domain calls for more treatment alternatives, while numerous promising pre-clinical drugs have failed in clinical trials.

MolFM: A Multimodal Molecular Foundation Model

2 code implementations6 Jun 2023 Yizhen Luo, Kai Yang, Massimo Hong, Xing Yi Liu, Zaiqing Nie

In this study, we introduce MolFM, a multimodal molecular foundation model designed to facilitate joint representation learning from molecular structures, biomedical texts, and knowledge graphs.

Cross-Modal Retrieval Knowledge Graphs +4

Towards Unified AI Drug Discovery with Multiple Knowledge Modalities

no code implementations17 Apr 2023 Yizhen Luo, Xing Yi Liu, Kai Yang, Kui Huang, Massimo Hong, Jiahuan Zhang, Yushuai Wu, Zaiqing Nie

In recent years, AI models that mine intrinsic patterns from molecular structures and protein sequences have shown promise in accelerating drug discovery.

Drug Discovery Knowledge Graphs +2

CogDL: A Comprehensive Library for Graph Deep Learning

1 code implementation1 Mar 2021 Yukuo Cen, Zhenyu Hou, Yan Wang, Qibin Chen, Yizhen Luo, Zhongming Yu, Hengrui Zhang, Xingcheng Yao, Aohan Zeng, Shiguang Guo, Yuxiao Dong, Yang Yang, Peng Zhang, Guohao Dai, Yu Wang, Chang Zhou, Hongxia Yang, Jie Tang

In CogDL, we propose a unified design for the training and evaluation of GNN models for various graph tasks, making it unique among existing graph learning libraries.

Deep Learning Graph Classification +6

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