1 code implementation • 22 Jun 2024 • Han Liu, Hao Li, Jiacheng Wang, Yubo Fan, Zhoubing Xu, Ipek Oguz
Recently, in silico labeling has emerged as a promising alternative, aiming to use machine learning models to directly predict the fluorescently labeled images from label-free microscopy.
1 code implementation • 21 Nov 2023 • Han Liu, Yubo Fan, Zhoubing Xu, Benoit M. Dawant, Ipek Oguz
In this paper, we present our solution to tackle the multi-institutional unsupervised domain adaptation for the crossMoDA 2023 challenge.
1 code implementation • 14 Sep 2023 • Zhiyun Song, Penghui Du, Junpeng Yan, Kailu Li, Jianzhong Shou, Maode Lai, Yubo Fan, Yan Xu
Self-supervised pretraining attempts to enhance model performance by obtaining effective features from unlabeled data, and has demonstrated its effectiveness in the field of histopathology images.
1 code implementation • 22 Jul 2023 • Han Liu, Hao Li, Xing Yao, Yubo Fan, Dewei Hu, Benoit Dawant, Vishwesh Nath, Zhoubing Xu, Ipek Oguz
Cold-start AL is highly relevant in many practical scenarios but has been under-explored, especially for 3D medical segmentation tasks requiring substantial annotation effort.
1 code implementation • 11 Jul 2023 • Zhiwen Yang, Yang Zhou, HUI ZHANG, Bingzheng Wei, Yubo Fan, Yan Xu
To address this, we develop a generalist model that shares architecture and parameters across centers to utilize the shared knowledge.
1 code implementation • 30 Jun 2023 • Yongjian Wu, Yang Zhou, Jiya Saiyin, Bingzheng Wei, Maode Lai, Jianzhong Shou, Yubo Fan, Yan Xu
Foremost, our work demonstrates that the VLPM pre-trained on natural image-text pairs exhibits astonishing potential for downstream tasks in the medical field as well.
1 code implementation • 5 Jun 2023 • Yang Zhou, Yongjian Wu, Zihua Wang, Bingzheng Wei, Maode Lai, Jianzhong Shou, Yubo Fan, Yan Xu
Experiments on three datasets demonstrate the good generality of our method, which outperforms other image-level weakly supervised methods for nuclei instance segmentation, and achieves comparable performance to fully-supervised methods.
1 code implementation • 16 Oct 2022 • Ho Hin Lee, Yucheng Tang, Han Liu, Yubo Fan, Leon Y. Cai, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman
We evaluate our proposed approach on multi-organ segmentation with both non-contrast CT (NCCT) datasets and the MICCAI 2015 BTCV Challenge contrast-enhance CT (CECT) datasets.
no code implementations • 23 Sep 2022 • Han Liu, Yubo Fan, Ipek Oguz, Benoit M. Dawant
Automatic segmentation of vestibular schwannoma (VS) and cochlea from magnetic resonance imaging can facilitate VS treatment planning.
no code implementations • 18 May 2022 • Yang Zhou, Zhiwen Yang, HUI ZHANG, Eric I-Chao Chang, Yubo Fan, Yan Xu
(2) We adopt a task-driven strategy that couples a segmentation task with a generative adversarial network (GAN) framework to improve the translation performance.
1 code implementation • 18 May 2022 • Ziniu Qian, Kailu Li, Maode Lai, Eric I-Chao Chang, Bingzheng Wei, Yubo Fan, Yan Xu
Hispathological image segmentation algorithms play a critical role in computer aided diagnosis technology.
1 code implementation • 7 Mar 2022 • Han Liu, Yubo Fan, Hao Li, Jiacheng Wang, Dewei Hu, Can Cui, Ho Hin Lee, Huahong Zhang, Ipek Oguz
Previously, a training strategy termed Modality Dropout (ModDrop) has been applied to MS lesion segmentation to achieve the state-of-the-art performance with missing modality.
no code implementations • 25 Jan 2022 • Han Liu, Yubo Fan, Can Cui, Dingjie Su, Andrew McNeil, Benoit M. Dawant
Automatic methods to segment the vestibular schwannoma (VS) tumors and the cochlea from magnetic resonance imaging (MRI) are critical to VS treatment planning.
3 code implementations • 8 Jan 2022 • Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeon Gyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sebastien Ourselin, Jonathan Shapey, Tom Vercauteren
The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137).
no code implementations • 13 Sep 2021 • Han Liu, Yubo Fan, Can Cui, Dingjie Su, Andrew McNeil, Benoit M. Dawant
Automatic methods to segment the vestibular schwannoma (VS) tumors and the cochlea from magnetic resonance imaging (MRI) are critical to VS treatment planning.
no code implementations • 8 Jul 2021 • Jianing Wang, Dingjie Su, Yubo Fan, Srijata Chakravorti, Jack H. Noble, Benoit M. Dawant
The segmentation of the ICA in the Post-CT images is subsequently obtained by transferring the predefined segmentation meshes of the ICA in the atlas image to the Post-CT images using the corresponding DDFs generated by the trained registration networks.
4 code implementations • 30 Nov 2017 • Bo Hu, Ye Tang, Eric I-Chao Chang, Yubo Fan, Maode Lai, Yan Xu
The visual attributes of cells, such as the nuclear morphology and chromatin openness, are critical for histopathology image analysis.
no code implementations • 23 Nov 2017 • Siyuan Shan, Wen Yan, Xiaoqing Guo, Eric I-Chao Chang, Yubo Fan, Yan Xu
The contributions of our algorithm are threefold: (1) We transplant traditional image registration algorithms to an end-to-end convolutional neural network framework, while maintaining the unsupervised nature of image registration problems.
no code implementations • 2 Nov 2017 • Xin Zhang, Weixuan Kou, Eric I-Chao Chang, He Gao, Yubo Fan, Yan Xu
The feature learning framework is designed to extract low- and mid-level features.
Automatic Sleep Stage Classification
General Classification
+1
no code implementations • 22 Nov 2016 • Yan Xu, Zhengyang Shen, Xin Zhang, Yifan Gao, Shujian Deng, Yipei Wang, Yubo Fan, Eric I-Chao Chang
This paper proposes a multi-level feature learning framework for human action recognition using a single body-worn inertial sensor.
no code implementations • 21 Nov 2016 • Yan Xu, Yang Li, Yipei Wang, Mingyuan Liu, Yubo Fan, Maode Lai, Eric I-Chao Chang
Methods: We leverage the idea of image-to-image prediction in recent deep learning by designing an algorithm that automatically exploits and fuses complex multichannel information - regional, location, and boundary cues - in gland histology images.
no code implementations • 17 Jul 2016 • Yan Xu, Yang Li, Mingyuan Liu, Yipei Wang, Yubo Fan, Maode Lai, Eric I-Chao Chang
Here we leverage the idea of image-to-image prediction in recent deep learning by building a framework that automatically exploits and fuses complex multichannel information, regional, location and boundary patterns in gland histology images.