1 code implementation • 23 Jun 2024 • Mrinal Kanti Dhar, Chuanbo Wang, Yash Patel, Taiyu Zhang, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Keke Chen, Zeyun Yu
Additionally, our hybrid model outperforms the state-of-the-art methods with a 92. 99% DSC in performing binary segmentation of DFU wound areas when tested on the Chronic Wound dataset.
1 code implementation • 26 Oct 2023 • Mrinal Kanti Dhar, Mou Deb, D. Madhab, Zeyun Yu
The proposed model's accuracy and versatility offer promising prospects for improving dental diagnoses, treatment planning, and personalized healthcare in the oral domain.
1 code implementation • 23 Aug 2023 • Yash Patel, Tirth Shah, Mrinal Kanti Dhar, Taiyu Zhang, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Zeyun Yu
The global burden of acute and chronic wounds presents a compelling case for enhancing wound classification methods, a vital step in diagnosing and determining optimal treatments.
1 code implementation • 4 May 2023 • Mrinal Kanti Dhar, Taiyu Zhang, Yash Patel, Sandeep Gopalakrishnan, Zeyun Yu
As the top decoder stage carries a limited number of feature maps, max-out scSE is bypassed there to form a shorted P-scSE.
no code implementations • 21 Jan 2023 • Hosein Barzekar, Yash Patel, Ling Tong, Zeyun Yu
Cancer is a leading cause of death in many countries.
no code implementations • 16 Dec 2022 • Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, Alison Noble, Carlos Ortiz de Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne Martel, Carlos Martín-Isla, Bjoern Menze, Chinedu Innocent Nwoye, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Carole Sudre, Kimberlin Van Wijnen, Armine Vardazaryan, Tom Vercauteren, Martin Wagner, Chuanbo Wang, Moi Hoon Yap, Zeyun Yu, Chun Yuan, Maximilian Zenk, Aneeq Zia, David Zimmerer, Rina Bao, Chanyeol Choi, Andrew Cohen, Oleh Dzyubachyk, Adrian Galdran, Tianyuan Gan, Tianqi Guo, Pradyumna Gupta, Mahmood Haithami, Edward Ho, Ikbeom Jang, Zhili Li, Zhengbo Luo, Filip Lux, Sokratis Makrogiannis, Dominik Müller, Young-tack Oh, Subeen Pang, Constantin Pape, Gorkem Polat, Charlotte Rosalie Reed, Kanghyun Ryu, Tim Scherr, Vajira Thambawita, Haoyu Wang, Xinliang Wang, Kele Xu, Hung Yeh, Doyeob Yeo, Yixuan Yuan, Yan Zeng, Xin Zhao, Julian Abbing, Jannes Adam, Nagesh Adluru, Niklas Agethen, Salman Ahmed, Yasmina Al Khalil, Mireia Alenyà, Esa Alhoniemi, Chengyang An, Talha Anwar, Tewodros Weldebirhan Arega, Netanell Avisdris, Dogu Baran Aydogan, Yingbin Bai, Maria Baldeon Calisto, Berke Doga Basaran, Marcel Beetz, Cheng Bian, Hao Bian, Kevin Blansit, Louise Bloch, Robert Bohnsack, Sara Bosticardo, Jack Breen, Mikael Brudfors, Raphael Brüngel, Mariano Cabezas, Alberto Cacciola, Zhiwei Chen, Yucong Chen, Daniel Tianming Chen, Minjeong Cho, Min-Kook Choi, Chuantao Xie Chuantao Xie, Dana Cobzas, Julien Cohen-Adad, Jorge Corral Acero, Sujit Kumar Das, Marcela de Oliveira, Hanqiu Deng, Guiming Dong, Lars Doorenbos, Cory Efird, Sergio Escalera, Di Fan, Mehdi Fatan Serj, Alexandre Fenneteau, Lucas Fidon, Patryk Filipiak, René Finzel, Nuno R. Freitas, Christoph M. Friedrich, Mitchell Fulton, Finn Gaida, Francesco Galati, Christoforos Galazis, Chang Hee Gan, Zheyao Gao, Shengbo Gao, Matej Gazda, Beerend Gerats, Neil Getty, Adam Gibicar, Ryan Gifford, Sajan Gohil, Maria Grammatikopoulou, Daniel Grzech, Orhun Güley, Timo Günnemann, Chunxu Guo, Sylvain Guy, Heonjin Ha, Luyi Han, Il Song Han, Ali Hatamizadeh, Tian He, Jimin Heo, Sebastian Hitziger, SeulGi Hong, Seungbum Hong, Rian Huang, Ziyan Huang, Markus Huellebrand, Stephan Huschauer, Mustaffa Hussain, Tomoo Inubushi, Ece Isik Polat, Mojtaba Jafaritadi, SeongHun Jeong, Bailiang Jian, Yuanhong Jiang, Zhifan Jiang, Yueming Jin, Smriti Joshi, Abdolrahim Kadkhodamohammadi, Reda Abdellah Kamraoui, Inha Kang, Junghwa Kang, Davood Karimi, April Khademi, Muhammad Irfan Khan, Suleiman A. Khan, Rishab Khantwal, Kwang-Ju Kim, Timothy Kline, Satoshi Kondo, Elina Kontio, Adrian Krenzer, Artem Kroviakov, Hugo Kuijf, Satyadwyoom Kumar, Francesco La Rosa, Abhi Lad, Doohee Lee, Minho Lee, Chiara Lena, Hao Li, Ling Li, Xingyu Li, Fuyuan Liao, Kuanlun Liao, Arlindo Limede Oliveira, Chaonan Lin, Shan Lin, Akis Linardos, Marius George Linguraru, Han Liu, Tao Liu, Di Liu, Yanling Liu, João Lourenço-Silva, Jingpei Lu, Jiangshan Lu, Imanol Luengo, Christina B. Lund, Huan Minh Luu, Yi Lv, Uzay Macar, Leon Maechler, Sina Mansour L., Kenji Marshall, Moona Mazher, Richard McKinley, Alfonso Medela, Felix Meissen, Mingyuan Meng, Dylan Miller, Seyed Hossein Mirjahanmardi, Arnab Mishra, Samir Mitha, Hassan Mohy-ud-Din, Tony Chi Wing Mok, Gowtham Krishnan Murugesan, Enamundram Naga Karthik, Sahil Nalawade, Jakub Nalepa, Mohamed Naser, Ramin Nateghi, Hammad Naveed, Quang-Minh Nguyen, Cuong Nguyen Quoc, Brennan Nichyporuk, Bruno Oliveira, David Owen, Jimut Bahan Pal, Junwen Pan, Wentao Pan, Winnie Pang, Bogyu Park, Vivek Pawar, Kamlesh Pawar, Michael Peven, Lena Philipp, Tomasz Pieciak, Szymon Plotka, Marcel Plutat, Fattaneh Pourakpour, Domen Preložnik, Kumaradevan Punithakumar, Abdul Qayyum, Sandro Queirós, Arman Rahmim, Salar Razavi, Jintao Ren, Mina Rezaei, Jonathan Adam Rico, ZunHyan Rieu, Markus Rink, Johannes Roth, Yusely Ruiz-Gonzalez, Numan Saeed, Anindo Saha, Mostafa Salem, Ricardo Sanchez-Matilla, Kurt Schilling, Wei Shao, Zhiqiang Shen, Ruize Shi, Pengcheng Shi, Daniel Sobotka, Théodore Soulier, Bella Specktor Fadida, Danail Stoyanov, Timothy Sum Hon Mun, Xiaowu Sun, Rong Tao, Franz Thaler, Antoine Théberge, Felix Thielke, Helena Torres, Kareem A. Wahid, Jiacheng Wang, Yifei Wang, Wei Wang, Xiong Wang, Jianhui Wen, Ning Wen, Marek Wodzinski, Ye Wu, Fangfang Xia, Tianqi Xiang, Chen Xiaofei, Lizhan Xu, Tingting Xue, Yuxuan Yang, Lin Yang, Kai Yao, Huifeng Yao, Amirsaeed Yazdani, Michael Yip, Hwanseung Yoo, Fereshteh Yousefirizi, Shunkai Yu, Lei Yu, Jonathan Zamora, Ramy Ashraf Zeineldin, Dewen Zeng, Jianpeng Zhang, Bokai Zhang, Jiapeng Zhang, Fan Zhang, Huahong Zhang, Zhongchen Zhao, Zixuan Zhao, Jiachen Zhao, Can Zhao, Qingshuo Zheng, Yuheng Zhi, Ziqi Zhou, Baosheng Zou, Klaus Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein
Of these, 84% were based on standard architectures.
no code implementations • 17 Apr 2022 • D. M. Anisuzzaman, Yash Patel, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Zeyun Yu
This study used wound photos to construct a deep neural network-based wound severity classifier that classified them into one of three classes: green, yellow, or red.
no code implementations • 28 Feb 2022 • Farnaz H. Foomani, Shahzad Mirza, Sahjid Mukhida, Kannuri Sriram, Zeyun Yu, Aayush Gupta, Sandeep Gopalakrishnan
We trained an individual ML algorithm on each antimicrobial family to determine whether a Gram-Positive Cocci (GPC) or Gram-Negative Bacilli (GNB) bacteria will resist the corresponding antibiotic.
no code implementations • 2 Jan 2022 • Chuanbo Wang, Amirreza Mahbod, Isabella Ellinger, Adrian Galdran, Sandeep Gopalakrishnan, Jeffrey Niezgoda, Zeyun Yu
Segmentation of wound boundaries in images is a key component of the care and diagnosis protocol since it is important to estimate the area of the wound and provide quantitative measurement for the treatment.
no code implementations • 30 Nov 2021 • Mrinal Kanti Dhar, Zeyun Yu
A 3D U-Net architecture is used for model training.
no code implementations • 14 Sep 2021 • D. M. Anisuzzaman, Yash Patel, Behrouz Rostami, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Zeyun Yu
This study developed a deep neural network-based multi-modal classifier using wound images and their corresponding locations to categorize wound images into multiple classes, including diabetic, pressure, surgical, and venous ulcers.
no code implementations • 3 May 2021 • Farnaz H. Foomani, D. M. Anisuzzaman, Jeffrey Niezgoda, Jonathan Niezgoda, William Guns, Sandeep Gopalakrishnan, Zeyun Yu
We utilized samples generated by our proposed GAN in training a prognosis model to demonstrate its real-life application.
no code implementations • 1 Mar 2021 • Behrouz Rostami, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Zeyun Yu
A pre-trained deep convolutional neural network, AlexNet, is fine-tuned using a burn wound image dataset and utilized as the classifier.
no code implementations • 2 Nov 2020 • D M Anisuzzaman, Hosein Barzekar, Ling Tong, Jake Luo, Zeyun Yu
In this study, transfer learning techniques, pre-trained CNNs, are adapted to a public dataset on osteosarcoma histological images to detect necrotic images from non-necrotic and healthy tissues.
1 code implementation • 30 Oct 2020 • Hosein Barzekar, Zeyun Yu
In this study, we propose a novel convolutional neural network (CNN) architecture composed of a Concatenation of multiple Networks, called C-Net, to classify biomedical images.
1 code implementation • 19 Oct 2020 • Behrouz Rostami, D. M. Anisuzzaman, Chuanbo Wang, Sandeep Gopalakrishnan, Jeffrey Niezgoda, Zeyun Yu
Acute and chronic wounds are a challenge to healthcare systems around the world and affect many people's lives annually.
1 code implementation • 12 Oct 2020 • Chuanbo Wang, DM Anisuzzaman, Victor Williamson, Mrinal Kanti Dhar, Behrouz Rostami, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Zeyun Yu
Fully automatic segmentation of wound areas in natural images is an important part of the diagnosis and care protocol since it is crucial to measure the area of the wound and provide quantitative parameters in the treatment.
no code implementations • 28 Sep 2020 • Chuanbo Wang, Ye Guo, Wei Chen, Zeyun Yu
With the advance of deep learning, various neural network models have gained great success in image analysis including the recognition of intervertebral discs.
no code implementations • 15 Sep 2020 • D. M. Anisuzzaman, Chuanbo Wang, Behrouz Rostami, Sandeep Gopalakrishnan, Jeffrey Niezgoda, Zeyun Yu
Efficient and effective assessment of acute and chronic wounds can help wound care teams in clinical practice to greatly improve wound diagnosis, optimize treatment plans, ease the workload and achieve health related quality of life to the patient population.
1 code implementation • 15 Sep 2020 • D. M. Anisuzzaman, Yash Patel, Jeffrey Niezgoda, Sandeep Gopalakrishnan, Zeyun Yu
We present an automated wound localizer from 2D wound and ulcer images by using deep neural network, as the first step towards building an automated and complete wound diagnostic system.
no code implementations • 8 Jan 2019 • Fereshteh S. Bashiri, Reihaneh Rostami, Peggy Peissig, Roshan M. D'souza, Zeyun Yu
With the rapid expansion of applied 3D computational vision, shape descriptors have become increasingly important for a wide variety of applications and objects from molecules to planets.
no code implementations • 11 Apr 2015 • Ahmad Pahlavan Tafti, Hamid Hassannia, Zeyun Yu
Image features detection and description is a longstanding topic in computer vision and pattern recognition areas.
no code implementations • 19 Feb 2015 • Ahmadreza Baghaie, Roshan M. D'souza, Zeyun Yu
Therefore the need for speckle noise reduction techniques is of high importance.
no code implementations • 14 Nov 2014 • Ahmadreza Baghaie, Roshan M. D'souza, Zeyun Yu
Optical Coherence Tomography (OCT) is an emerging technique in the field of biomedical imaging, with applications in ophthalmology, dermatology, coronary imaging etc.
no code implementations • 8 Nov 2014 • Ahmadreza Baghaie, Zeyun Yu, Roshan M. D'souza
The minimization process was achieved using a mesh based discretization of the distance measure and regularization term which resulted in a sparse system of linear equations, which due to the smaller size in comparison to the pixel-wise registration method, can be solved directly.
no code implementations • 4 Nov 2014 • Ahmadreza Baghaie, Roshan M. D'souza, Zeyun Yu
Here, the focus is on applications of OCT in ophthalmology and retinal imaging.
no code implementations • 27 Jun 2014 • Ke Liu, Ming Xu, Zeyun Yu
The triangulation of images has become an active research area in recent years for its compressive representation and ease of image processing and visualization.
no code implementations • 22 Feb 2014 • Ahmadreza Baghaie, Zeyun Yu
Using an isotropic Gaussian filter, the structure tensor at each pixel of the input image is computed and the pixels are classified to three distinct classes; uniform region, corners and edges, according to the eigenvalues of the structure tensor.
no code implementations • 5 Feb 2014 • Ahmadreza Baghaie, Zeyun Yu
Slice interpolation is a fast growing field in medical image processing.