1 code implementation • 3 Jul 2024 • Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
The complex nonlinear elasticity theory is leveraged to formally establish the partial differential equations (PDEs) representing physics laws of biomechanical constraints that need to be satisfied, with which registration and identification tasks are treated as forward (i. e., data-driven solutions of PDEs) and inverse (i. e., parameter estimation) problems under PINNs respectively.
no code implementations • 16 Feb 2024 • Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu
For training registration networks, weak supervision from segmented corresponding regions-of-interest (ROIs) have been proven effective for (a) supplementing unsupervised methods, and (b) being used independently in registration tasks in which unsupervised losses are unavailable or ineffective.
no code implementations • 17 Jul 2023 • Wen Yan, Bernard Chiu, Ziyi Shen, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, David Atkinson, Dean C. Barratt, Yipeng Hu
One of the distinct characteristics in radiologists' reading of multiparametric prostate MR scans, using reporting systems such as PI-RADS v2. 1, is to score individual types of MR modalities, T2-weighted, diffusion-weighted, and dynamic contrast-enhanced, and then combine these image-modality-specific scores using standardised decision rules to predict the likelihood of clinically significant cancer.
1 code implementation • 20 Feb 2023 • Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu
Biomechanical modelling of soft tissue provides a non-data-driven method for constraining medical image registration, such that the estimated spatial transformation is considered biophysically plausible.
1 code implementation • 12 Sep 2022 • Yiwen Li, Yunguan Fu, Iani Gayo, Qianye Yang, Zhe Min, Shaheer Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean Barratt, Victor Adrian Prisacariu, Yipeng Hu
The prowess that makes few-shot learning desirable in medical image analysis is the efficient use of the support image data, which are labelled to classify or segment new classes, a task that otherwise requires substantially more training images and expert annotations.
no code implementations • 30 Mar 2022 • Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu
However, the differences in false-positives and false-negatives, between the actual errors and the perceived counterparts if DSC is used, can be as high as 152 and 154, respectively, out of the 357 test set lesions.
no code implementations • 17 Jan 2022 • Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan Huisman, Dean Barratt, Victor Adrian Prisacariu, Yipeng Hu
The ability to adapt medical image segmentation networks for a novel class such as an unseen anatomical or pathological structure, when only a few labelled examples of this class are available from local healthcare providers, is sought-after.
no code implementations • 4 Jun 2021 • Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean Barratt, Yipeng Hu
Prostate cancer (PCa) is one of the leading causes of death for men worldwide.
1 code implementation • 4 Nov 2020 • Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
DeepReg (https://github. com/DeepRegNet/DeepReg) is a community-supported open-source toolkit for research and education in medical image registration using deep learning.
no code implementations • 26 Dec 2019 • Delong Zhu, Jianbang Liu, Nachuan Ma, Zhe Min, Max Q. -H. Meng
To verify the effectiveness of the algorithm, we collect an elevator panel dataset of 50 images captured from different angles of view.