1 code implementation • 21 Nov 2024 • Tianbin Li, Yanzhou Su, Wei Li, Bin Fu, Zhe Chen, Ziyan Huang, Guoan Wang, Chenglong Ma, Ying Chen, Ming Hu, Yanjun Li, Pengcheng Chen, Xiaowei Hu, Zhongying Deng, Yuanfeng Ji, Jin Ye, Yu Qiao, Junjun He
Despite significant advancements in general artificial intelligence, such as GPT-4, their effectiveness in the medical domain (general medical AI, GMAI) remains constrained due to the absence of specialized medical knowledge.
no code implementations • 21 Nov 2024 • Jin Ye, Ying Chen, Yanjun Li, Haoyu Wang, Zhongying Deng, Ziyan Huang, Yanzhou Su, Chenglong Ma, Yuanfeng Ji, Junjun He
To address this problem, a large-scale benchmark for comprehensive evaluation is crucial for finding these conditions.
1 code implementation • 6 Nov 2024 • Pedro R. A. S. Bassi, Wenxuan Li, Yucheng Tang, Fabian Isensee, Zifu Wang, Jieneng Chen, Yu-Cheng Chou, Yannick Kirchhoff, Maximilian Rokuss, Ziyan Huang, Jin Ye, Junjun He, Tassilo Wald, Constantin Ulrich, Michael Baumgartner, Saikat Roy, Klaus H. Maier-Hein, Paul Jaeger, Yiwen Ye, Yutong Xie, Jianpeng Zhang, Ziyang Chen, Yong Xia, Zhaohu Xing, Lei Zhu, Yousef Sadegheih, Afshin Bozorgpour, Pratibha Kumari, Reza Azad, Dorit Merhof, Pengcheng Shi, Ting Ma, Yuxin Du, Fan Bai, Tiejun Huang, Bo Zhao, Haonan Wang, Xiaomeng Li, Hanxue Gu, Haoyu Dong, Jichen Yang, Maciej A. Mazurowski, Saumya Gupta, Linshan Wu, Jiaxin Zhuang, Hao Chen, Holger Roth, Daguang Xu, Matthew B. Blaschko, Sergio Decherchi, Andrea Cavalli, Alan L. Yuille, Zongwei Zhou
We are committed to expanding this benchmark to encourage more innovation of AI algorithms for the medical domain.
no code implementations • 22 Aug 2024 • Jun Ma, Yao Zhang, Song Gu, Cheng Ge, Ershuai Wang, Qin Zhou, Ziyan Huang, Pengju Lyu, Jian He, Bo wang
Organ and cancer segmentation in abdomen Computed Tomography (CT) scans is the prerequisite for precise cancer diagnosis and treatment.
1 code implementation • 6 Aug 2024 • Pengcheng Chen, Jin Ye, Guoan Wang, Yanjun Li, Zhongying Deng, Wei Li, Tianbin Li, Haodong Duan, Ziyan Huang, Yanzhou Su, Benyou Wang, Shaoting Zhang, Bin Fu, Jianfei Cai, Bohan Zhuang, Eric J Seibel, Junjun He, Yu Qiao
Large Vision-Language Models (LVLMs) are capable of handling diverse data types such as imaging, text, and physiological signals, and can be applied in various fields.
no code implementations • 8 Feb 2024 • Kelly Payette, Céline Steger, Roxane Licandro, Priscille de Dumast, Hongwei Bran Li, Matthew Barkovich, Liu Li, Maik Dannecker, Chen Chen, Cheng Ouyang, Niccolò McConnell, Alina Miron, Yongmin Li, Alena Uus, Irina Grigorescu, Paula Ramirez Gilliland, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Haoyu Wang, Ziyan Huang, Jin Ye, Mireia Alenyà, Valentin Comte, Oscar Camara, Jean-Baptiste Masson, Astrid Nilsson, Charlotte Godard, Moona Mazher, Abdul Qayyum, Yibo Gao, Hangqi Zhou, Shangqi Gao, Jia Fu, Guiming Dong, Guotai Wang, ZunHyan Rieu, HyeonSik Yang, Minwoo Lee, Szymon Płotka, Michal K. Grzeszczyk, Arkadiusz Sitek, Luisa Vargas Daza, Santiago Usma, Pablo Arbelaez, Wenying Lu, WenHao Zhang, Jing Liang, Romain Valabregue, Anand A. Joshi, Krishna N. Nayak, Richard M. Leahy, Luca Wilhelmi, Aline Dändliker, Hui Ji, Antonio G. Gennari, Anton Jakovčić, Melita Klaić, Ana Adžić, Pavel Marković, Gracia Grabarić, Gregor Kasprian, Gregor Dovjak, Milan Rados, Lana Vasung, Meritxell Bach Cuadra, Andras Jakab
The FeTA Challenge 2022 was able to successfully evaluate and advance generalizability of multi-class fetal brain tissue segmentation algorithms for MRI and it continues to benchmark new algorithms.
no code implementations • 7 Dec 2023 • Pengcheng Chen, Ziyan Huang, Zhongying Deng, Tianbin Li, Yanzhou Su, Haoyu Wang, Jin Ye, Yu Qiao, Junjun He
OpenAI's latest large vision-language model (LVLM), GPT-4V(ision), has piqued considerable interest for its potential in medical applications.
1 code implementation • 20 Nov 2023 • Jin Ye, Junlong Cheng, Jianpin Chen, Zhongying Deng, Tianbin Li, Haoyu Wang, Yanzhou Su, Ziyan Huang, Jilong Chen, Lei Jiang, Hui Sun, Min Zhu, Shaoting Zhang, Junjun He, Yu Qiao
Segment Anything Model (SAM) has achieved impressive results for natural image segmentation with input prompts such as points and bounding boxes.
1 code implementation • 23 Oct 2023 • Haoyu Wang, Sizheng Guo, Jin Ye, Zhongying Deng, Junlong Cheng, Tianbin Li, Jianpin Chen, Yanzhou Su, Ziyan Huang, Yiqing Shen, Bin Fu, Shaoting Zhang, Junjun He, Yu Qiao
In this paper, we introduce SAM-Med3D for general-purpose segmentation on volumetric medical images.
2 code implementations • 7 Sep 2023 • Ziyan Huang, Zhongying Deng, Jin Ye, Haoyu Wang, Yanzhou Su, Tianbin Li, Hui Sun, Junlong Cheng, Jianpin Chen, Junjun He, Yun Gu, Shaoting Zhang, Lixu Gu, Yu Qiao
To address these questions, we introduce A-Eval, a benchmark for the cross-dataset Evaluation ('Eval') of Abdominal ('A') multi-organ segmentation.
3 code implementations • 30 Aug 2023 • Junlong Cheng, Jin Ye, Zhongying Deng, Jianpin Chen, Tianbin Li, Haoyu Wang, Yanzhou Su, Ziyan Huang, Jilong Chen, Lei Jiang, Hui Sun, Junjun He, Shaoting Zhang, Min Zhu, Yu Qiao
To bridge this gap, we introduce SAM-Med2D, the most comprehensive studies on applying SAM to medical 2D images.
2 code implementations • 10 Aug 2023 • Jun Ma, Yao Zhang, Song Gu, Cheng Ge, Shihao Ma, Adamo Young, Cheng Zhu, Kangkang Meng, Xin Yang, Ziyan Huang, Fan Zhang, Wentao Liu, YuanKe Pan, Shoujin Huang, Jiacheng Wang, Mingze Sun, Weixin Xu, Dengqiang Jia, Jae Won Choi, Natália Alves, Bram de Wilde, Gregor Koehler, Yajun Wu, Manuel Wiesenfarth, Qiongjie Zhu, Guoqiang Dong, Jian He, the FLARE Challenge Consortium, Bo wang
The best-performing algorithms successfully generalized to holdout external validation sets, achieving a median DSC of 89. 5\%, 90. 9\%, and 88. 3\% on North American, European, and Asian cohorts, respectively.
no code implementations • 13 Apr 2023 • Ziyan Huang, Haoyu Wang, Zhongying Deng, Jin Ye, Yanzhou Su, Hui Sun, Junjun He, Yun Gu, Lixu Gu, Shaoting Zhang, Yu Qiao
However, the state-of-the-art models for medical image segmentation are still small-scale, with their parameters only in the tens of millions.
no code implementations • 16 Dec 2022 • Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, Alison Noble, Carlos Ortiz de Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne Martel, Carlos Martín-Isla, Bjoern Menze, Chinedu Innocent Nwoye, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Carole Sudre, Kimberlin Van Wijnen, Armine Vardazaryan, Tom Vercauteren, Martin Wagner, Chuanbo Wang, Moi Hoon Yap, Zeyun Yu, Chun Yuan, Maximilian Zenk, Aneeq Zia, David Zimmerer, Rina Bao, Chanyeol Choi, Andrew Cohen, Oleh Dzyubachyk, Adrian Galdran, Tianyuan Gan, Tianqi Guo, Pradyumna Gupta, Mahmood Haithami, Edward Ho, Ikbeom Jang, Zhili Li, Zhengbo Luo, Filip Lux, Sokratis Makrogiannis, Dominik Müller, Young-tack Oh, Subeen Pang, Constantin Pape, Gorkem Polat, Charlotte Rosalie Reed, Kanghyun Ryu, Tim Scherr, Vajira Thambawita, Haoyu Wang, Xinliang Wang, Kele Xu, Hung Yeh, Doyeob Yeo, Yixuan Yuan, Yan Zeng, Xin Zhao, Julian Abbing, Jannes Adam, Nagesh Adluru, Niklas Agethen, Salman Ahmed, Yasmina Al Khalil, Mireia Alenyà, Esa Alhoniemi, Chengyang An, Talha Anwar, Tewodros Weldebirhan Arega, Netanell Avisdris, Dogu Baran Aydogan, Yingbin Bai, Maria Baldeon Calisto, Berke Doga Basaran, Marcel Beetz, Cheng Bian, Hao Bian, Kevin Blansit, Louise Bloch, Robert Bohnsack, Sara Bosticardo, Jack Breen, Mikael Brudfors, Raphael Brüngel, Mariano Cabezas, Alberto Cacciola, Zhiwei Chen, Yucong Chen, Daniel Tianming Chen, Minjeong Cho, Min-Kook Choi, Chuantao Xie Chuantao Xie, Dana Cobzas, Julien Cohen-Adad, Jorge Corral Acero, Sujit Kumar Das, Marcela de Oliveira, Hanqiu Deng, Guiming Dong, Lars Doorenbos, Cory Efird, Sergio Escalera, Di Fan, Mehdi Fatan Serj, Alexandre Fenneteau, Lucas Fidon, Patryk Filipiak, René Finzel, Nuno R. Freitas, Christoph M. Friedrich, Mitchell Fulton, Finn Gaida, Francesco Galati, Christoforos Galazis, Chang Hee Gan, Zheyao Gao, Shengbo Gao, Matej Gazda, Beerend Gerats, Neil Getty, Adam Gibicar, Ryan Gifford, Sajan Gohil, Maria Grammatikopoulou, Daniel Grzech, Orhun Güley, Timo Günnemann, Chunxu Guo, Sylvain Guy, Heonjin Ha, Luyi Han, Il Song Han, Ali Hatamizadeh, Tian He, Jimin Heo, Sebastian Hitziger, SeulGi Hong, Seungbum Hong, Rian Huang, Ziyan Huang, Markus Huellebrand, Stephan Huschauer, Mustaffa Hussain, Tomoo Inubushi, Ece Isik Polat, Mojtaba Jafaritadi, SeongHun Jeong, Bailiang Jian, Yuanhong Jiang, Zhifan Jiang, Yueming Jin, Smriti Joshi, Abdolrahim Kadkhodamohammadi, Reda Abdellah Kamraoui, Inha Kang, Junghwa Kang, Davood Karimi, April Khademi, Muhammad Irfan Khan, Suleiman A. Khan, Rishab Khantwal, Kwang-Ju Kim, Timothy Kline, Satoshi Kondo, Elina Kontio, Adrian Krenzer, Artem Kroviakov, Hugo Kuijf, Satyadwyoom Kumar, Francesco La Rosa, Abhi Lad, Doohee Lee, Minho Lee, Chiara Lena, Hao Li, Ling Li, Xingyu Li, Fuyuan Liao, Kuanlun Liao, Arlindo Limede Oliveira, Chaonan Lin, Shan Lin, Akis Linardos, Marius George Linguraru, Han Liu, Tao Liu, Di Liu, Yanling Liu, João Lourenço-Silva, Jingpei Lu, Jiangshan Lu, Imanol Luengo, Christina B. Lund, Huan Minh Luu, Yi Lv, Uzay Macar, Leon Maechler, Sina Mansour L., Kenji Marshall, Moona Mazher, Richard McKinley, Alfonso Medela, Felix Meissen, Mingyuan Meng, Dylan Miller, Seyed Hossein Mirjahanmardi, Arnab Mishra, Samir Mitha, Hassan Mohy-ud-Din, Tony Chi Wing Mok, Gowtham Krishnan Murugesan, Enamundram Naga Karthik, Sahil Nalawade, Jakub Nalepa, Mohamed Naser, Ramin Nateghi, Hammad Naveed, Quang-Minh Nguyen, Cuong Nguyen Quoc, Brennan Nichyporuk, Bruno Oliveira, David Owen, Jimut Bahan Pal, Junwen Pan, Wentao Pan, Winnie Pang, Bogyu Park, Vivek Pawar, Kamlesh Pawar, Michael Peven, Lena Philipp, Tomasz Pieciak, Szymon Plotka, Marcel Plutat, Fattaneh Pourakpour, Domen Preložnik, Kumaradevan Punithakumar, Abdul Qayyum, Sandro Queirós, Arman Rahmim, Salar Razavi, Jintao Ren, Mina Rezaei, Jonathan Adam Rico, ZunHyan Rieu, Markus Rink, Johannes Roth, Yusely Ruiz-Gonzalez, Numan Saeed, Anindo Saha, Mostafa Salem, Ricardo Sanchez-Matilla, Kurt Schilling, Wei Shao, Zhiqiang Shen, Ruize Shi, Pengcheng Shi, Daniel Sobotka, Théodore Soulier, Bella Specktor Fadida, Danail Stoyanov, Timothy Sum Hon Mun, Xiaowu Sun, Rong Tao, Franz Thaler, Antoine Théberge, Felix Thielke, Helena Torres, Kareem A. Wahid, Jiacheng Wang, Yifei Wang, Wei Wang, Xiong Wang, Jianhui Wen, Ning Wen, Marek Wodzinski, Ye Wu, Fangfang Xia, Tianqi Xiang, Chen Xiaofei, Lizhan Xu, Tingting Xue, Yuxuan Yang, Lin Yang, Kai Yao, Huifeng Yao, Amirsaeed Yazdani, Michael Yip, Hwanseung Yoo, Fereshteh Yousefirizi, Shunkai Yu, Lei Yu, Jonathan Zamora, Ramy Ashraf Zeineldin, Dewen Zeng, Jianpeng Zhang, Bokai Zhang, Jiapeng Zhang, Fan Zhang, Huahong Zhang, Zhongchen Zhao, Zixuan Zhao, Jiachen Zhao, Can Zhao, Qingshuo Zheng, Yuheng Zhi, Ziqi Zhou, Baosheng Zou, Klaus Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein
Of these, 84% were based on standard architectures.
1 code implementation • 14 Oct 2022 • Jin Ye, Haoyu Wang, Ziyan Huang, Zhongying Deng, Yanzhou Su, Can Tu, Qian Wu, Yuncheng Yang, Meng Wei, Jingqi Niu, Junjun He
The combination of PET-based metabolic and CT-based anatomic information can contribute to better tumor segmentation results.
no code implementations • 6 Sep 2022 • Haoyu Wang, Ziyan Huang, Jin Ye, Can Tu, Yuncheng Yang, Shiyi Du, Zhongying Deng, Chenglong Ma, Jingqi Niu, Junjun He
Renal structure segmentation from computed tomography angiography~(CTA) is essential for many computer-assisted renal cancer treatment applications.