Cell Tracking

41 papers with code • 0 benchmarks • 1 datasets

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Datasets


Most implemented papers

U-Net: Convolutional Networks for Biomedical Image Segmentation

labmlai/annotated_deep_learning_paper_implementations 18 May 2015

There is large consent that successful training of deep networks requires many thousand annotated training samples.

MPM: Joint Representation of Motion and Position Map for Cell Tracking

JunyaHayashida/MPM CVPR 2020

Conventional cell tracking methods detect multiple cells in each frame (detection) and then associate the detection results in successive time-frames (association).

Microscopy Cell Segmentation via Convolutional LSTM Networks

arbellea/LSTM-UNet 29 May 2018

Live cell microscopy sequences exhibit complex spatial structures and complicated temporal behaviour, making their analysis a challenging task.

A Primal-Dual Solver for Large-Scale Tracking-by-Assignment

vislearn/libct 14 Apr 2020

We demonstrate the efficacy of our method on real-world tracking problems.

A Deep Learning Bidirectional Temporal Tracking Algorithm for Automated Blood Cell Counting from Non-invasive Capillaroscopy Videos

DurrLab/CycleTrack 26 Nov 2020

Compared to manual blood cell counting, CycleTrack achieves 96. 58 $\pm$ 2. 43% cell counting accuracy among 8 test videos with 1000 frames each compared to 93. 45% and 77. 02% accuracy for independent CenterTrack and SORT almost without additional time expense.

Graph Neural Network for Cell Tracking in Microscopy Videos

talbenha/cell-tracker-gnn 9 Feb 2022

By modeling the entire time-lapse sequence as a direct graph where cell instances are represented by its nodes and their associations by its edges, we extract the entire set of cell trajectories by looking for the maximal paths in the graph.

Tracking Tetrahymena Pyriformis Cells using Decision Trees

wq2012/DecisionForest 13 Jul 2012

Matching cells over time has long been the most difficult step in cell tracking.

Cell Tracking via Proposal Generation and Selection

SaadUllahAkram/CellTracker 9 May 2017

Microscopy imaging plays a vital role in understanding many biological processes in development and disease.

Lightweight and Scalable Particle Tracking and Motion Clustering of 3D Cell Trajectories

quinngroup/3Dcell_tracking_DSAA2019 10 Aug 2019

Tracking cell particles in 3D microscopy videos is a challenging task but is of great significance for modeling the motion of cells.

Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features

SAIL-GuoLab/Cell_Segmentation_and_Tracking 15 Jan 2020

The ability to extrapolate gene expression dynamics in living single cells requires robust cell segmentation, and one of the challenges is the amorphous or irregularly shaped cell boundaries.