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Electron Microscopy Image Segmentation

5 papers with code ยท Computer Vision

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Biologically-Constrained Graphs for Global Connectomics Reconstruction

CVPR 2019

Most current state-of-the-art connectome reconstruction pipelines have two major steps: initial pixel-based segmentation with affinity prediction and watershed transform, and refined segmentation by merging over-segmented regions.

 SOTA for Electron Microscopy Image Segmentation on SNEMI3D (Total Variation of Information metric )

ELECTRON MICROSCOPY IMAGE SEGMENTATION GRAPH CONSTRUCTION GRAPH PARTITIONING

Learning Metric Graphs for Neuron Segmentation In Electron Microscopy Images

31 Jan 2019

Both empirically and theoretically, it is unclear whether or when deep metric learning is superior to the more conventional approach of directly predicting an affinity graph with a convolutional net.

ELECTRON MICROSCOPY IMAGE SEGMENTATION INSTANCE SEGMENTATION METRIC LEARNING SEMANTIC SEGMENTATION

High-Precision Automated Reconstruction of Neurons with Flood-filling Networks

Nature Methods 2017

Reconstruction of neural circuits from volume electron microscopy data requires the tracing of complete cells including all their neurites.

ELECTRON MICROSCOPY IMAGE SEGMENTATION IMAGE RECONSTRUCTION

Large-Scale Electron Microscopy Image Segmentation in Spark

1 Apr 2016

In this paper, we propose a novel strategy to apply such segmentation on very large datasets that exceed the capacity of a single machine.

ELECTRON MICROSCOPY IMAGE SEGMENTATION SEMANTIC SEGMENTATION

An Iterative Convolutional Neural Network Algorithm Improves Electron Microscopy Image Segmentation

18 Jun 2015

To build the connectomics map of the brain, we developed a new algorithm that can automatically refine the Membrane Detection Probability Maps (MDPM) generated to perform automatic segmentation of electron microscopy (EM) images.

ELECTRON MICROSCOPY IMAGE SEGMENTATION SEMANTIC SEGMENTATION