no code implementations • 22 Nov 2023 • Ekin Yagis, Shahab Aslani, Yashvardhan Jain, Yang Zhou, Shahrokh Rahmani, Joseph Brunet, Alexandre Bellier, Christopher Werlein, Maximilian Ackermann, Danny Jonigk, Paul Tafforeau, Peter D Lee, Claire Walsh
Moreover, decreased connectivity in finer vessels and higher segmentation errors at vessel boundaries were observed.
1 code implementation • 23 Feb 2023 • Mark Eastwood, Heba Sailem, Silviu Tudor, Xiaohong Gao, Judith Offman, Emmanouil Karteris, Angeles Montero Fernandez, Danny Jonigk, William Cookson, Miriam Moffatt, Sanjay Popat, Fayyaz Minhas, Jan Lukas Robertus
Tissue is represented by a cell graph with both cell-level morphological and regional features.
no code implementations • 23 Jul 2021 • Andrea J. Radtke, Colin J. Chu, Ziv Yaniv, Li Yao, James Marr, Rebecca T. Beuschel, Hiroshi Ichise, Anita Gola, Juraj Kabat, Bradley Lowekamp, Emily Speranza, Joshua Croteau, Nishant Thakur, Danny Jonigk, Jeremy Davis, Jonathan M. Hernandez, Ronald N. Germain
We recently developed Iterative Bleaching Extends multi-pleXity (IBEX), an iterative immunolabeling and chemical bleaching method that enables multiplexed imaging (>65 parameters) in diverse tissues, including human organs relevant for international consortia efforts.