The BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora. These tasks cover a diverse range of text genres (biomedical literature and clinical notes), dataset sizes, and degrees of difficulty and, more importantly, highlight common biomedicine text-mining challenges.
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ChemProt consists of 1,820 PubMed abstracts with chemical-protein interactions annotated by domain experts and was used in the BioCreative VI text mining chemical-protein interactions shared task.
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