Protein Structure Prediction

11 papers with code • 0 benchmarks • 1 datasets

This task has no description! Would you like to contribute one?

Greatest papers with code

Highly accurate protein structure prediction with AlphaFold

deepmind/alphafold Nature 2021

Accurate computational approaches are needed to address this gap and to enable large-scale structural bioinformatics.

Protein Folding Protein Structure Prediction

Iterative SE(3)-Transformers

FabianFuchsML/se3-transformer-public 26 Feb 2021

Motivated by this application, we implement an iterative version of the SE(3)-Transformer, an SE(3)-equivariant attention-based model for graph data.

Protein Structure Prediction

Distribution-Free, Risk-Controlling Prediction Sets

DengPingFan/PraNet 7 Jan 2021

While improving prediction accuracy has been the focus of machine learning in recent years, this alone does not suffice for reliable decision-making.

Decision Making General Classification +5

ProteinNet: a standardized data set for machine learning of protein structure

EricAlcaide/MiniFold 1 Feb 2019

We have created the ProteinNet series of data sets to provide a standardized mechanism for training and assessing data-driven models of protein sequence-structure relationships.

Protein Secondary Structure Prediction Protein Structure Prediction

MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction

mzweilin/EvadeML-Zoo 10 May 2016

Predicting protein properties such as solvent accessibility and secondary structure from its primary amino acid sequence is an important task in bioinformatics.

General Classification Image Classification +1

SidechainNet: An All-Atom Protein Structure Dataset for Machine Learning

jonathanking/sidechainnet 16 Oct 2020

Despite recent advancements in deep learning methods for protein structure prediction and representation, little focus has been directed at the simultaneous inclusion and prediction of protein backbone and sidechain structure information.

Protein Structure Prediction

Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction

LucaAngioloni/ProteinSecondaryStructure-CNN 6 Mar 2014

Here we present a new supervised generative stochastic network (GSN) based method to predict local secondary structure with deep hierarchical representations.

Protein Secondary Structure Prediction Protein Structure Prediction

Energy-based models for atomic-resolution protein conformations

facebookresearch/protein-ebm ICLR 2020

We propose an energy-based model (EBM) of protein conformations that operates at atomic scale.

Protein Structure Prediction

Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations

idrori/cu-tsp 9 Nov 2019

Our dataset consists of amino acid sequences, Q8 secondary structures, position specific scoring matrices, multiple sequence alignment co-evolutionary features, backbone atom distance matrices, torsion angles, and 3D coordinates.

Multiple Sequence Alignment Protein Structure Prediction

PolyFold: an interactive visual simulator for distance-based protein folding

Bhattacharya-Lab/PolyFold 14 Feb 2020

Here we present PolyFold, an interactive visual simulator for dynamically capturing the distance-based protein folding process through real-time rendering of a distance matrix and its compatible spatial conformation as it folds in an intuitive and easy-to-use interface.

Platform Protein Folding +2