Tumor Segmentation

223 papers with code • 3 benchmarks • 9 datasets

Tumor Segmentation is the task of identifying the spatial location of a tumor. It is a pixel-level prediction where each pixel is classified as a tumor or background. The most popular benchmark for this task is the BraTS dataset. The models are typically evaluated with the Dice Score metric.

Libraries

Use these libraries to find Tumor Segmentation models and implementations

Most implemented papers

Brain Tumor Segmentation with Deep Neural Networks

naldeborgh7575/brain_segmentation 13 May 2015

Finally, we explore a cascade architecture in which the output of a basic CNN is treated as an additional source of information for a subsequent CNN.

Automatic Brain Tumor Segmentation using Cascaded Anisotropic Convolutional Neural Networks

charan223/Brain-Tumor-Segmentation-using-Topological-Loss 1 Sep 2017

A cascade of fully convolutional neural networks is proposed to segment multi-modal Magnetic Resonance (MR) images with brain tumor into background and three hierarchical regions: whole tumor, tumor core and enhancing tumor core.

Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge

pykao/Modified-3D-UNet-Pytorch 28 Feb 2018

Quantitative analysis of brain tumors is critical for clinical decision making.

3D MRI brain tumor segmentation using autoencoder regularization

black0017/MedicalZooPytorch 27 Oct 2018

Automated segmentation of brain tumors from 3D magnetic resonance images (MRIs) is necessary for the diagnosis, monitoring, and treatment planning of the disease.

The KiTS19 Challenge Data: 300 Kidney Tumor Cases with Clinical Context, CT Semantic Segmentations, and Surgical Outcomes

neheller/kits19 31 Mar 2019

The morphometry of a kidney tumor revealed by contrast-enhanced Computed Tomography (CT) imaging is an important factor in clinical decision making surrounding the lesion's diagnosis and treatment.

The Liver Tumor Segmentation Benchmark (LiTS)

lee-zq/3DUNet-Pytorch 13 Jan 2019

In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LiTS), which was organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 and the International Conferences on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2017 and 2018.

Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks

IBBM/Cascaded-FCN 20 Feb 2017

In the first step, we train a FCN to segment the liver as ROI input for a second FCN.

Association of genomic subtypes of lower-grade gliomas with shape features automatically extracted by a deep learning algorithm

mateuszbuda/brain-segmentation 9 Jun 2019

Based on automatic deep learning segmentations, we extracted three features which quantify two-dimensional and three-dimensional characteristics of the tumors.

The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 Challenge

neheller/kits19 2 Dec 2019

The 2019 Kidney and Kidney Tumor Segmentation challenge (KiTS19) was a competition held in conjunction with the 2019 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) which sought to address these issues and stimulate progress on this automatic segmentation problem.

nnU-Net for Brain Tumor Segmentation

MIC-DKFZ/nnunet 2 Nov 2020

We apply nnU-Net to the segmentation task of the BraTS 2020 challenge.