1 code implementation • bioRxiv 2023 • Abdel Rahman Alsabbagh, Alberto Maillo Ruiz de Infante, David Gomez-Cabrero, Narsis A. Kiani, Sumeer Ahmad Khan, Jesper N. Tegnér
We benchmark three foundation models, scGPT, scBERT, and Geneformer, using skewed single-cell cell-type distribution for cell-type annotation.
1 code implementation • 5 Apr 2023 • Juan Munoz, Subash Balsamy, Juan P. Bernal-Tamayo, Ali Balubaid, Alberto Maillo Ruiz de Infante, Vincenzo Lagani, David Gomez-Cabrero, Narsis A. Kiani, Jesper Tegner
However, it remains challenging to model hidden non-observable control variables governing switching between different dynamical regimes.