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Found 2 papers, 1 papers with code
UQSA -- An R-Package for Uncertainty Quantification and Sensitivity Analysis for Biochemical Reaction Network Models
We aim for simplicity, and part of that is our use of the SBtab format for the unified storage of model and data.
Inferring Regulatory Networks by Combining Perturbation Screens and Steady State Gene Expression Profiles
The proposed approach is based on a three-step algorithm to estimate the underlying directed but cyclic network, that uses as input both perturbation screens and steady state gene expression data.
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