no code implementations • 30 Jun 2021 • Borko Bošković, Janez Brest
To locate better sequences for this problem, we designed a stochastic algorithm that uses two fitness functions.
no code implementations • 4 Mar 2019 • Borko Bošković, Janez Brest
The first phase is responsible for forming conformations with a good hydrophobic core or a set of compact hydrophobic amino acid positions.
no code implementations • 19 Oct 2017 • Borko Bošković, Janez Brest
The designed evolutionary algorithm has fast convergence speed and, therefore, when it is trapped into the local optimum or a relatively good solution is located, it is hard to locate a better similar solution.
1 code implementation • 20 Jun 2014 • Borko Bošković, Franc Brglez, Janez Brest
To mitigate the computational constraints of the problem, we consider solvers that accept odd values of sequence length $L$ and return solutions for skew-symmetric binary sequences only -- with the consequence that not all best solutions under this constraint will be optimal for each $L$.