Search Results for author: Borko Bošković

Found 4 papers, 1 papers with code

Two-phase Optimization of Binary Sequences with Low Peak Sidelobe Level Value

no code implementations30 Jun 2021 Borko Bošković, Janez Brest

To locate better sequences for this problem, we designed a stochastic algorithm that uses two fitness functions.

Two-phase protein folding optimization on a three-dimensional AB off-lattice model

no code implementations4 Mar 2019 Borko Bošković, Janez Brest

The first phase is responsible for forming conformations with a good hydrophobic core or a set of compact hydrophobic amino acid positions.

Protein Folding

Protein Folding Optimization using Differential Evolution Extended with Local Search and Component Reinitialization

no code implementations19 Oct 2017 Borko Bošković, Janez Brest

The designed evolutionary algorithm has fast convergence speed and, therefore, when it is trapped into the local optimum or a relatively good solution is located, it is hard to locate a better similar solution.

Protein Folding

Low-Autocorrelation Binary Sequences: On Improved Merit Factors and Runtime Predictions to Achieve Them

1 code implementation20 Jun 2014 Borko Bošković, Franc Brglez, Janez Brest

To mitigate the computational constraints of the problem, we consider solvers that accept odd values of sequence length $L$ and return solutions for skew-symmetric binary sequences only -- with the consequence that not all best solutions under this constraint will be optimal for each $L$.

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