Search Results for author: Bryce Kille

Found 2 papers, 2 papers with code

Date Published Github Stars

Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets

1 code implementation • 7 May 2021 • Bryce Kille, Yunxi Liu, Nicolae Sapoval, Michael Nute, Lawrence Rauchwerger, Nancy Amato, Todd J. Treangen

With recent advances in sequencing technology it has become affordable and practical to sequence genomes to very high depth-of-coverage, allowing researchers to discover low-frequency variants in the genome.

1
Paper
Code

Fast Processing and Querying of 170TB of Genomics Data via a Repeated And Merged BloOm Filter (RAMBO)

1 code implementation • 10 Oct 2019 • Gaurav Gupta, Minghao Yan, Benjamin Coleman, Bryce Kille, R. A. Leo Elworth, Tharun Medini, Todd Treangen, Anshumali Shrivastava

Interestingly, it is a count-min sketch type arrangement of a membership testing utility (Bloom Filter in our case).

11
Paper
Code
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