Search Results for author: Christopher D. Cooper

Found 3 papers, 3 papers with code

Date Published Github Stars

Computational nanoplasmonics for biosensing applications using PyGBe-LSPR

1 code implementation • 27 Dec 2018 • Natalia C. Clementi, Christopher D. Cooper, Lorena A. Barba

For a model of a sensor-analyte system, consisting of a spherical silver nanoparticle and a set of bovine serum albumin (BSA) proteins, our results again obtain grid convergence as 1/N (with respect to the Richardson extrapolated value).

Computational Physics Biological Physics

3
Paper
Code

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

3 code implementations • 11 Jun 2015 • Christopher D. Cooper, Lorena A. Barba

This paper develops and evaluates a computational model to study electrostatic interactions of proteins and charged nanosurfaces, via the Poisson-Boltzmann equation.

Computational Physics

63
Paper
Code

A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers

3 code implementations • 16 Sep 2013 • Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba

This work presents a solver called PyGBe that uses a boundary-element formulation and can handle multiple interacting surfaces.

Computational Physics

63
Paper
Code
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