Search Results for author: Dani Korpela

Found 2 papers, 1 papers with code

Field-based Molecule Generation

no code implementations24 Feb 2024 Alexandru Dumitrescu, Dani Korpela, Markus Heinonen, Yogesh Verma, Valerii Iakovlev, Vikas Garg, Harri Lähdesmäki

This work introduces FMG, a field-based model for drug-like molecule generation.

Cotranscriptional kinetic folding of RNA secondary structures including pseudoknots

1 code implementation10 Jul 2020 Vo Hong Thanh, Dani Korpela, Pekka Orponen

We propose a single-nucleotide resolution kinetic model of the folding process of RNA molecules, where the polymerase-driven elongation of an RNA strand by a new nucleotide is included as a primitive operation, together with a stochastic simulation method that implements this folding concurrently with the transcriptional synthesis.

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