Search Results for author: David A Duchêne

Found 2 papers, 2 papers with code

Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees

1 code implementation9 Jun 2023 Matthew J Penn, Neil Scheidwasser, Joseph Penn, Christl A Donnelly, David A Duchêne, Samir Bhatt

Phylogenetics is now fundamental in life sciences, providing insights into the earliest branches of life and the origins and spread of epidemics.

Phylo2Vec: a vector representation for binary trees

1 code implementation25 Apr 2023 Matthew J Penn, Neil Scheidwasser, Mark P Khurana, David A Duchêne, Christl A Donnelly, Samir Bhatt

Yet, these heuristics often lack a systematic means of uniformly sampling random trees or effectively exploring a tree space that grows factorially, which are crucial to optimisation problems such as machine learning.

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