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Found 2 papers, 2 papers with code
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction
Second, we evaluate our method on predicting gene-disease associations based on phenotype similarity by generating vector representations of genes and diseases using a phenotype ontology, and applying the obtained vectors to predict gene-disease associations.
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations
We propose the Onto2Vec method, an approach to learn feature vectors for biological entities based on their annotations to biomedical ontologies.
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