Transfer String Kernel for Cross-Context DNA-Protein Binding Prediction

1 code implementation • 12 Sep 2016 • Ritambhara Singh, Jack Lanchantin, Gabriel Robins, Yanjun Qi

Related methods in the literature fail to perform such predictions accurately, since they do not consider sample distribution shift of sequence segments from an annotated (source) context to an unannotated (target) context.

Transfer Learning

DeepChrome: Deep-learning for predicting gene expression from histone modifications

1 code implementation • 7 Jul 2016 • Ritambhara Singh, Jack Lanchantin, Gabriel Robins, Yanjun Qi

To simultaneously visualize the combinatorial interactions among histone modifications, we propose a novel optimization-based technique that generates feature pattern maps from the learnt deep model.