no code implementations • 20 Jun 2023 • Michael Maser, Natasa Tagasovska, Jae Hyeon Lee, Andrew Watkins
As we train our predictive models jointly with a conformer decoder, the new latent embeddings can be mapped to their corresponding inputs, which we call \textit{MoleCLUEs}, or (molecular) counterfactual latent uncertainty explanations \citep{antoran2020getting}.
1 code implementation • NeurIPS 2023 • Pedro O. Pinheiro, Joshua Rackers, Joseph Kleinhenz, Michael Maser, Omar Mahmood, Andrew Martin Watkins, Stephen Ra, Vishnu Sresht, Saeed Saremi
We propose a new score-based approach to generate 3D molecules represented as atomic densities on regular grids.
no code implementations • 1 Jun 2023 • Ji Won Park, Nataša Tagasovska, Michael Maser, Stephen Ra, Kyunghyun Cho
At the heart of MOBO is the acquisition function, which determines the next candidate to evaluate by navigating the best compromises among the objectives.
no code implementations • 15 Feb 2023 • Michael Maser, Ji Won Park, Joshua Yao-Yu Lin, Jae Hyeon Lee, Nathan C. Frey, Andrew Watkins
We investigate Siamese networks for learning related embeddings for augmented samples of molecular conformers.