no code implementations • 2 Jun 2023 • Masoud Tafavvoghi, Lars Ailo Bongo, Nikita Shvetsov, Lill-Tove Rasmussen Busund, Kajsa Møllersen
In this scoping review, we identified the publicly available datasets of breast H&E stained whole-slide images (WSI) that can be used to develop deep learning algorithms.
2 code implementations • 14 Feb 2022 • Nikita Shvetsov, Morten Grønnesby, Edvard Pedersen, Kajsa Møllersen, Lill-Tove Rasmussen Busund, Ruth Schwienbacher, Lars Ailo Bongo, Thomas K. Kilvaer
Our approach is to transfer an open source machine learning method for segmentation and classification of nuclei in H&E slides trained on public data to TIL quantification without manual labeling of our data.
1 code implementation • 7 Jun 2021 • Bjørn-Richard Pedersen, Einar Holsbø, Trygve Andersen, Nikita Shvetsov, Johan Ravn, Hilde Leikny Sommerseth, Lars Ailo Bongo
We believe our approach and lessons learned may be useful for other transcription projects that plan to use machine learning in production.