Search Results for author: Parisa Mollaei

Found 4 papers, 3 papers with code

IDP-Bert: Predicting Properties of Intrinsically Disordered Proteins (IDP) Using Large Language Models

1 code implementation28 Mar 2024 Parisa Mollaei, Chakradhar Guntuboina, Danush Sadasivam, Amir Barati Farimani

In this study, we introduce IDP-Bert model, a deep-learning architecture leveraging Transformers and Protein Language Models (PLMs) to map sequences directly to IDPs properties.

Characterization of Phosphorylated Tau-Microtubule complex with Molecular Dynamics (MD) simulation

1 code implementation18 Dec 2023 Seongwon Kim, Parisa Mollaei, Amir Barati Farimani, Anne Skaja Robinson

Alzheimer's Disease (AD), a neurodegenerative disorder, is reported as one of the most severe health and socioeconomic problems in current public health.

Dimensionality Reduction

GPCR-BERT: Interpreting Sequential Design of G Protein Coupled Receptors Using Protein Language Models

no code implementations30 Oct 2023 Seongwon Kim, Parisa Mollaei, Akshay Antony, Rishikesh Magar, Amir Barati Farimani

In this paper, we developed the GPCR-BERT model for understanding the sequential design of G Protein-Coupled Receptors (GPCRs).

PeptideBERT: A Language Model based on Transformers for Peptide Property Prediction

1 code implementation28 Aug 2023 Chakradhar Guntuboina, Adrita Das, Parisa Mollaei, Seongwon Kim, Amir Barati Farimani

In this work, inspired by recent progress in Large Language Models (LLMs), we introduce PeptideBERT, a protein language model for predicting three key properties of peptides (hemolysis, solubility, and non-fouling).

Property Prediction Protein Language Model

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