Torus Graphs for Multivariate Phase Coupling Analysis

1 code implementation • 24 Oct 2019 • Natalie Klein, Josue Orellana, Scott Brincat, Earl K. Miller, Robert E. Kass

Angular measurements are often modeled as circular random variables, where there are natural circular analogues of moments, including correlation.

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data

8 code implementations • 24 May 2016 • Pengcheng Zhou, Shanna L. Resendez, Jose Rodriguez-Romaguera, Jessica C. Jimenez, Shay Q. Neufeld, Garret D. Stuber, Rene Hen, Mazen A. Kheirbek, Bernardo L. Sabatini, Robert E. Kass, Liam Paninski

In vivo calcium imaging through microscopes has enabled deep brain imaging of previously inaccessible neuronal populations within the brains of freely moving subjects.

False discovery rate regression: an application to neural synchrony detection in primary visual cortex

1 code implementation • 12 Jul 2013 • James G. Scott, Ryan C. Kelly, Matthew A. Smith, Pengcheng Zhou, Robert E. Kass

But this may be inappropriate for many of today's large-scale screening problems, where auxiliary information about each test is often available, and where a combined analysis can lead to poorly calibrated error rates within different subsets of the experiment.

Methodology Applications