Search Results for author: Tomas Pluskal

Found 2 papers, 1 papers with code

Revealing data leakage in protein interaction benchmarks

no code implementations16 Apr 2024 Anton Bushuiev, Roman Bushuiev, Jiri Sedlar, Tomas Pluskal, Jiri Damborsky, Stanislav Mazurenko, Josef Sivic

To overcome the data leakage, we recommend constructing data splits based on 3D structural similarity of protein-protein interfaces and suggest corresponding algorithms.

Benchmarking

Learning to design protein-protein interactions with enhanced generalization

2 code implementations27 Oct 2023 Anton Bushuiev, Roman Bushuiev, Petr Kouba, Anatolii Filkin, Marketa Gabrielova, Michal Gabriel, Jiri Sedlar, Tomas Pluskal, Jiri Damborsky, Stanislav Mazurenko, Josef Sivic

Discovering mutations enhancing protein-protein interactions (PPIs) is critical for advancing biomedical research and developing improved therapeutics.

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