Metagenome2Vec: Building Contextualized Representations for Scalable Metagenome Analysis

no code implementations • 9 Nov 2021 • Sathyanarayanan N. Aakur, Vineela Indla, Vennela Indla, Sai Narayanan, Arunkumar Bagavathi, Vishalini Laguduva Ramnath, Akhilesh Ramachandran

There is an increased need for learning robust representations from metagenome reads since pathogens within a family can have highly similar genome structures (some more than 90%) and hence enable the segmentation and identification of novel pathogen sequences with limited labeled data.

Representation Learning