no code implementations • 22 Apr 2024 • Johannes Hugger, Virginie Uhlmann
Our new soft target InfoNCE loss is conceptually simple, efficient to compute, and can be derived within the framework of noise contrastive estimation.
no code implementations • 17 Nov 2023 • Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur, Josh Moore, Arrate Muñoz-Barrutia, Liviu Anita, Kola Babalola, Pete Bankhead, Perrine Gilloteaux, Nodar Gogoberidze, Martin Jones, Gerard J. Kleywegt, Paul Korir, Anna Kreshuk, Aybüke Küpcü Yoldaş, Luca Marconato, Kedar Narayan, Nils Norlin, Bugra Oezdemir, Jessica Riesterer, Norman Rzepka, Ugis Sarkans, Beatriz Serrano, Christian Tischer, Virginie Uhlmann, Vladimír Ulman, Matthew Hartley
These include standards on data formats, metadata, data presentation and sharing, and incentives to generate new datasets.
no code implementations • 3 Feb 2023 • Siân Culley, Alicia Cuber Caballero, Jemima J Burden, Virginie Uhlmann
Acknowledging that what makes a measurement "good" is ultimately down to the biological question being investigated, this review aims at providing readers with a toolkit to challenge how they quantify their own data and be critical of conclusions drawn from quantitative bioimage analysis experiments.
no code implementations • 6 Jul 2021 • Adrien Hallou, Hannah Yevick, Bianca Dumitrascu, Virginie Uhlmann
Deep learning has transformed the way large and complex image datasets can be processed, reshaping what is possible in bioimage analysis.
1 code implementation • 2 Feb 2021 • Ethan Cohen, Virginie Uhlmann
We present AURA-net, a convolutional neural network (CNN) for the segmentation of phase-contrast microscopy images.
no code implementations • 23 Oct 2018 • Julien Fageot, Virginie Uhlmann, Zsuzsanna Püspöki, Benjamin Beck, Michael Unser, Adrien Depeursinge
We provide a complete pipeline for the detection of patterns of interest in an image.
no code implementations • 15 Mar 2018 • Carsten Haubold, Virginie Uhlmann, Michael Unser, Fred A. Hamprecht
Many computer vision pipelines involve dynamic programming primitives such as finding a shortest path or the minimum energy solution in a tree-shaped probabilistic graphical model.