Mouse Brain MRI atlas (both in-vivo and ex-vivo) (repository relocated from the original webpage)
FVB_NCrl: Brain MRI atlas of the wild-type FVB_NCrl
mouse strain (used as the background strain for the rTg4510
which is a tauopathy model mice express a repressible form of human tau containing the P301L mutation that has been linked with familial frontotemporal dementia.)
NeAt: Brain MRI atlas of the whld-type C57BL/6J
mouse strain. Atlas was created based on the original MRM NeAt
mouse brain atlas (template images reoriented and bias-corrected, left/right structure label seperated, and 4th ventricle manual segmentation added).
Tc1 Cerebellum: TC1 mouse cerebellar cortical sublayer lobules.This mouse cerebellar atlas can be used for mouse cerebellar morphometry.
If you use the segmented brain structure, or use the atlas along with the automatic mouse brain MRI segmentation tools, we ask you to kindly cite the following papers:
Ma D, Cardoso MJ, Modat M, Powell N, Wells J, Holmes H, Wiseman F, Tybulewicz V, Fisher E, Lythgoe MF, Ourselin S. Automatic structural parcellation of mouse brain MRI using multi-atlas label fusion. PloS one. 2014 Jan 27;9(1):e86576. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086576
Ma D, Holmes HE, Cardoso MJ, Modat M, Harrison IF, Powell NM, O'Callaghan J, Ismail O, Johnson RA, O’Neill MJ, Collins EC, Mirza F. Beg, Karteek Popuri, Mark F. Lythgoe, and Sebastien Ourselin Study the longitudinal in vivo and cross-sectional ex vivo brain volume difference for disease progression and treatment effect on mouse model of tauopathy using automated MRI structural parcellation. Frontiers in Neuroscience. 2019;13:11. https://www.frontiersin.org/articles/10.3389/fnins.2019.00011
If you use the brain MR images of the FVB_NCrl
mouse strain (the wildtype background of rTg4510), we ask you to kindly cite the following papers:
Wells JA, O'Callaghan JM, Holmes HE, Powell NM, Johnson RA, Siow B, Torrealdea F, Ismail O, Walker-Samuel S, Golay X, Rega M. In vivo imaging of tau pathology using multi-parametric quantitative MRI. Neuroimage. 2015 May 1;111:369-78. https://www.sciencedirect.com/science/article/pii/S105381191500124X
Holmes HE, Colgan N, Ismail O, Ma D, Powell NM, O'Callaghan JM, Harrison IF, Johnson RA, Murray TK, Ahmed Z, Heggenes M. Imaging the accumulation and suppression of tau pathology using multiparametric MRI. Neurobiology of aging. 2016 Mar 1;39:184-94. https://www.sciencedirect.com/science/article/pii/S0197458015006053
Holmes HE, Powell NM, Ma D, Ismail O, Harrison IF, Wells JA, Colgan N, O'Callaghan JM, Johnson RA, Murray TK, Ahmed Z. Comparison of in vivo and ex vivo MRI for the detection of structural abnormalities in a mouse model of tauopathy. Frontiers in neuroinformatics. 2017 Mar 31;11:20. https://www.frontiersin.org/articles/10.3389/fninf.2017.00020/full
If you're using the mouse MRI T2* Active Starining Cerebellar atlas, we ask you to please kindly cite the following papers:
NeAt
atlas, please please refer to the website: http://brainatlas.mbi.ufl.edu/, and the following two reference papers:The works in this repositories received multiple funding from EPSRC, UCL Leonard Wolfson Experimental Neurology center, Medical Research Council (MRC), the NIHR Biomedical Research Unit (Dementia) at UCL and the National Institute for Health Research University College London Hospitals Biomedical Research center, the UK Regenerative Medicine Platform Safety Hub, and the Kings College London and UCL Comprehensive Cancer Imaging center CRUK & EPSRC in association with the MRC and DoH (England), UCL Faculty of Engineering funding scheme, Alzheimer Society Reseasrch Program from Alzheimer Society Canada, NSERC, CIHR, MSFHR Canada, Eli Lilly and Company, Wellcome Trust, the Francis Crick Institute, Cancer Research UK, and University of Melbourne McKenzie Fellowship.
Paper | Code | Results | Date | Stars |
---|