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Brain Tumor Segmentation

9 papers with code · Medical

Brain tumor segmentation is the task of segmenting tumors from other brain artefacts in MRI image of the brain.

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Brain Tumor Segmentation with Deep Neural Networks

13 May 2015naldeborgh7575/brain_segmentation

Also, different from most traditional uses of CNNs, our networks use a final layer that is a convolutional implementation of a fully connected layer which allows a 40 fold speed up. Finally, we explore a cascade architecture in which the output of a basic CNN is treated as an additional source of information for a subsequent CNN.

BRAIN TUMOR SEGMENTATION

Automatic Brain Tumor Segmentation using Cascaded Anisotropic Convolutional Neural Networks

1 Sep 2017taigw/brats17

A cascade of fully convolutional neural networks is proposed to segment multi-modal Magnetic Resonance (MR) images with brain tumor into background and three hierarchical regions: whole tumor, tumor core and enhancing tumor core. The whole tumor is segmented in the first step and the bounding box of the result is used for the tumor core segmentation in the second step.

BRAIN TUMOR SEGMENTATION

Autofocus Layer for Semantic Segmentation

22 May 2018yaq007/Autofocus-Layer

We propose the autofocus convolutional layer for semantic segmentation with the objective of enhancing the capabilities of neural networks for multi-scale processing. Autofocus layers adaptively change the size of the effective receptive field based on the processed context to generate more powerful features.

BRAIN TUMOR SEGMENTATION SEMANTIC SEGMENTATION

Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation

18 Mar 2016yaq007/Autofocus-Layer

We propose a dual pathway, 11-layers deep, three-dimensional Convolutional Neural Network for the challenging task of brain lesion segmentation. Our pipeline is extensively evaluated on three challenging tasks of lesion segmentation in multi-channel MRI patient data with traumatic brain injuries, brain tumors, and ischemic stroke.

BRAIN TUMOR SEGMENTATION LESION SEGMENTATION

DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation

3 Jul 2017taigw/geodesic_distance

Accurate medical image segmentation is essential for diagnosis, surgical planning and many other applications. We propose a deep learning-based interactive segmentation method to improve the results obtained by an automatic CNN and to reduce user interactions during refinement for higher accuracy.

BRAIN TUMOR SEGMENTATION PLACENTA SEGMENTATION SEMANTIC SEGMENTATION

Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge

28 Feb 2018Jack-Etheredge/Brain-Tumor-Segmentation-3D-UNet-CNN

Quantitative analysis of brain tumors is critical for clinical decision making. While manual segmentation is tedious, time consuming and subjective, this task is at the same time very challenging to solve for automatic segmentation methods.

BRAIN TUMOR SEGMENTATION DECISION MAKING

Brain Tumor Segmentation Based on Refined Fully Convolutional Neural Networks with A Hierarchical Dice Loss

25 Dec 2017milliondegree/semantic-segmentation-tensorflow

Since the proposal of fully convolutional neural network (FCNN), it has been widely used in semantic segmentation because of its high accuracy of pixel-wise classification as well as high precision of localization. Massive experiments have been done on the training set and testing set in order to assess our refined fully convolutional neural networks and new types of loss function.

BRAIN TUMOR SEGMENTATION INSTANCE SEGMENTATION OBJECT DETECTION SEMANTIC SEGMENTATION

Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge

5 Nov 2018christophbrgr/brats-orchestra

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e. 2012-2018.

BRAIN TUMOR SEGMENTATION

Adaptive feature recombination and recalibration for semantic segmentation: application to brain tumor segmentation in MRI

6 Jun 2018sergiormpereira/rr_segse

Convolutional neural networks (CNNs) have been successfully used for brain tumor segmentation, specifically, fully convolutional networks (FCNs). However, this is not optimal in FCN due to the spatial correspondence between units and voxels.

BRAIN TUMOR SEGMENTATION SEMANTIC SEGMENTATION