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Protein Secondary Structure Prediction

7 papers with code ยท Medical

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Seq-SetNet: Exploring Sequence Sets for Inferring Structures

6 Jun 2019

Therefore, the traditional deep neural networks designed for image processing cannot be directly applied on sequence sets.

PROTEIN SECONDARY STRUCTURE PREDICTION

ProteinNet: a standardized data set for machine learning of protein structure

1 Feb 2019

We have created the ProteinNet series of data sets to provide a standardized mechanism for training and assessing data-driven models of protein sequence-structure relationships.

PROTEIN SECONDARY STRUCTURE PREDICTION

Neural Edit Operations for Biological Sequences

NeurIPS 2018

The evolution of biological sequences, such as proteins or DNAs, is driven by the three basic edit operations: substitution, insertion, and deletion.

PROTEIN SECONDARY STRUCTURE PREDICTION

MUFold-SS: Protein Secondary Structure Prediction Using Deep Inception-Inside-Inception Networks

12 Sep 2017

Results: Here, a very deep neural network, the deep inception-inside-inception networks (Deep3I), is proposed for protein secondary structure prediction and a software tool was implemented using this network.

IMAGE CLASSIFICATION PROTEIN SECONDARY STRUCTURE PREDICTION

Next-Step Conditioned Deep Convolutional Neural Networks Improve Protein Secondary Structure Prediction

13 Feb 2017

This sequential model achieves 70. 3% Q8 accuracy on CB513 with a single model; an ensemble of these models produces 71. 4% Q8 accuracy on the same test set, improving upon the previous overall state of the art for the eight-class secondary structure problem.

PROTEIN SECONDARY STRUCTURE PREDICTION

Protein Secondary Structure Prediction Using Deep Multi-scale Convolutional Neural Networks and Next-Step Conditioning

4 Nov 2016

We first train a series of deep neural networks to predict eight-class secondary structure labels given a protein's amino acid sequence information and find that using recent methods for regularization, such as dropout and weight-norm constraining, leads to measurable gains in accuracy.

PROTEIN SECONDARY STRUCTURE PREDICTION

Protein Secondary Structure Prediction with Long Short Term Memory Networks

25 Dec 2014

Recurrent neural networks are an generalization of the feed forward neural network that naturally handle sequential data.

PROTEIN SECONDARY STRUCTURE PREDICTION