Search Results for author: Ali Sharifi-Zarchi

Found 4 papers, 1 papers with code

Novel Pipeline for Diagnosing Acute Lymphoblastic Leukemia Sensitive to Related Biomarkers

no code implementations8 Jul 2023 Amirhossein Askari-Farsangi, Ali Sharifi-Zarchi, Mohammad Hossein Rohban

We introduced a novel pipeline for diagnosing ALL that approximates the process used by hematologists, is sensitive to disease biomarkers, and achieves an accuracy of 96. 15%, an F1-score of 94. 24%, a sensitivity of 97. 56%, and a specificity of 90. 91% on ALL IDB 1.

Multiple Instance Learning Specificity

A Gradient-Based Approach to Neural Networks Structure Learning

no code implementations25 Sep 2019 Amir Ali Moinfar, Amirkeivan Mohtashami, Mahdieh Soleymani, Ali Sharifi-Zarchi

Designing the architecture of deep neural networks (DNNs) requires human expertise and is a cumbersome task.

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

1 code implementation7 Aug 2018 Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi

We employed this architecture on mRNA transcription profiles of 10787 clinical samples from 34 classes (one healthy and 33 different types of cancer) from 27 tissues.

Multi-Task Learning

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

no code implementations13 Jun 2018 Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz

Although we use an unsupervised approach to train the autoencoder, we show different values of the CIC are connected to different biological aspects of the cell, such as different pathways or biological processes.

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