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Found 7 papers, 2 papers with code
SARS-CoV-2 orthologs of pathogenesis-involved small viral RNAs of SARS-CoV
We also report potential targets for these svRNAs.
BPPart and BPMax: RNA-RNA Interaction Partition Function and Structure Prediction for the Base Pair Counting Model
Here, simple weighted base pair counting is considered to obtain BPPart for Base-pair Partition function and BPMax for Base-pair Maximization, which use 9 and 2 tables respectively.
DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome
We employed this architecture on mRNA transcription profiles of 10787 clinical samples from 34 classes (one healthy and 33 different types of cancer) from 27 tissues.
Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks
Although we use an unsupervised approach to train the autoencoder, we show different values of the CIC are connected to different biological aspects of the cell, such as different pathways or biological processes.
Scalable Nonlinear AUC Maximization Methods
The kernelized AUC maximization machines have established a superior generalization ability compared to linear AUC machines because of their capability in modeling the complex nonlinear structure underlying most real-world data.
Confidence-Weighted Bipartite Ranking
The experimental results validate the reliability of the proposed algorithms.
Exact Learning of RNA Energy Parameters From Structure
We consider the problem of exact learning of parameters of a linear RNA energy model from secondary structure data.
