no code implementations • 6 Feb 2024 • Ali Khajegili Mirabadi, Graham Archibald, Amirali Darbandsari, Alberto Contreras-Sanz, Ramin Ebrahim Nakhli, Maryam Asadi, Allen Zhang, C. Blake Gilks, Peter Black, Gang Wang, Hossein Farahani, Ali Bashashati
In this work, we present GRASP, a novel graph-structured multi-magnification framework for processing WSIs in digital pathology.
1 code implementation • 17 Dec 2023 • Zheng Zhang, Sirui Li, Jingcheng Zhou, Junxiang Wang, Abhinav Angirekula, Allen Zhang, Liang Zhao
Besides, existing spatial network representation learning methods can only consider networks embedded in Euclidean space, and can not well exploit the rich geometric information carried by irregular and non-uniform non-Euclidean space.
no code implementations • 8 Mar 2023 • Ramin Nakhli, Allen Zhang, Hossein Farahani, Amirali Darbandsari, Elahe Shenasa, Sidney Thiessen, Katy Milne, Jessica McAlpine, Brad Nelson, C Blake Gilks, Ali Bashashati
To showcase the potential power of our proposed framework, we applied VOLTA to ovarian and endometrial cancers with very small sample sizes (10-20 samples) and demonstrated that our cell representations can be utilized to identify the known histotypes of ovarian cancer and provide novel insights that link histopathology and molecular subtypes of endometrial cancer.
no code implementations • ICCV 2023 • Ramin Nakhli, Allen Zhang, Ali Mirabadi, Katherine Rich, Maryam Asadi, Blake Gilks, Hossein Farahani, Ali Bashashati
Importantly, our model is able to stratify the patients into different risk cohorts with statistically different outcomes across two large datasets, a task that was previously achievable only using genomic information.