no code implementations • 11 Aug 2023 • Sandun Rajapaksa, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arun S. Konagurthu
Using these inferred models and the relationship between the divergence of sequences and structures, we demonstrate a competitive performance in secondary structure prediction against neural network architectures commonly employed for this task.
no code implementations • 2 Oct 2020 • Dinithi Sumanaweera, Lloyd Allison, Arun S. Konagurthu
This work demonstrates how a complete statistical model quantifying the evolution of pairs of aligned proteins can be constructed from a time-parameterised substitution matrix and a time-parameterised 3-state alignment machine.
