no code implementations • 5 Feb 2024 • Khashayar Namdar, Matthias W. Wagner, Cynthia Hawkins, Uri Tabori, Birgit B. Ertl-Wagner, Farzad Khalvati
The baseline model was trained using binary cross entropy (BCE), and achieved an AUROC of 86. 11% for differentiating BRAF fusion and BRAF V600E mutations, which was improved to 87. 71% using our proposed AUROC loss function (p-value 0. 045).
no code implementations • 10 Nov 2022 • Jay J. Yoo, Khashayar Namdar, Matthias W. Wagner, Liana Nobre, Uri Tabori, Cynthia Hawkins, Birgit B. Ertl-Wagner, Farzad Khalvati
Segmentation of regions of interest (ROIs) for identifying abnormalities is a leading problem in medical imaging.
no code implementations • 29 Jul 2022 • Khashayar Namdar, Matthias W. Wagner, Birgit B. Ertl-Wagner, Farzad Khalvati
Using PyRadiomics library for LGG vs. HGG classification, 288 radiomics datasets are formed; the combinations of 4 MRI sequences, 3 binWidths, 6 image normalization methods, and 4 tumor subregions.
no code implementations • 29 Nov 2021 • Partoo Vafaeikia, Matthias W. Wagner, Uri Tabori, Birgit B. Ertl-Wagner, Farzad Khalvati
Brain tumor segmentation is a critical task for tumor volumetric analyses and AI algorithms.