Search Results for author: Boyan Beronov

Found 5 papers, 4 papers with code

ViDa: Visualizing DNA hybridization trajectories with biophysics-informed deep graph embeddings

1 code implementation6 Nov 2023 Chenwei Zhang, Jordan Lovrod, Boyan Beronov, Khanh Dao Duc, Anne Condon

Visualization tools can help synthetic biologists and molecular programmers understand the complex reactive pathways of nucleic acid reactions, which can be designed for many potential applications and can be modelled using a continuous-time Markov chain (CTMC).

Dimensionality Reduction

Planning as Inference in Epidemiological Models

1 code implementation30 Mar 2020 Frank Wood, Andrew Warrington, Saeid Naderiparizi, Christian Weilbach, Vaden Masrani, William Harvey, Adam Scibior, Boyan Beronov, John Grefenstette, Duncan Campbell, Ali Nasseri

In this work we demonstrate how to automate parts of the infectious disease-control policy-making process via performing inference in existing epidemiological models.

Probabilistic Programming

Efficient Inference Amortization in Graphical Models using Structured Continuous Conditional Normalizing Flows

no code implementations pproximateinference AABI Symposium 2019 Christian Weilbach, Boyan Beronov, William Harvey, Frank Wood

We introduce a more efficient neural architecture for amortized inference, which combines continuous and conditional normalizing flows using a principled choice of structure.

Probabilistic Programming

Sparse Variational Inference: Bayesian Coresets from Scratch

1 code implementation NeurIPS 2019 Trevor Campbell, Boyan Beronov

But the automation of past coreset methods is limited because they depend on the availability of a reasonable coarse posterior approximation, which is difficult to specify in practice.

Variational Inference

Unified functional network and nonlinear time series analysis for complex systems science: The pyunicorn package

1 code implementation2 Jul 2015 Jonathan F. Donges, Jobst Heitzig, Boyan Beronov, Marc Wiedermann, Jakob Runge, Qing Yi Feng, Liubov Tupikina, Veronika Stolbova, Reik V. Donner, Norbert Marwan, Henk A. Dijkstra, Jürgen Kurths

Additionally, \texttt{pyunicorn} provides insights into the nonlinear dynamics of complex systems as recorded in uni- and multivariate time series from a non-traditional perspective by means of recurrence quantification analysis (RQA), recurrence networks, visibility graphs and construction of surrogate time series.

Data Analysis, Statistics and Probability Atmospheric and Oceanic Physics

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