no code implementations • 29 Sep 2021 • James P. Roney, Paul Maragakis, Peter Skopp, David E. Shaw
In this paper, we present GEN3D, a model that concurrently generates molecular graphs and 3D geometries, and is equivariant to rotations, translations, and atom permutations.
1 code implementation • 14 Aug 2020 • John J. Cherian, Andrew G. Taube, Robert T. McGibbon, Panagiotis Angelikopoulos, Guy Blanc, Michael Snarski, Daniel D. Richman, John L. Klepeis, David E. Shaw
Identifying optimal values for a high-dimensional set of hyperparameters is a problem that has received growing attention given its importance to large-scale machine learning applications such as neural architecture search.
no code implementations • 7 Feb 2020 • Paul Maragakis, Hunter Nisonoff, Brian Cole, David E. Shaw
Drug discovery projects entail cycles of design, synthesis, and testing that yield a series of chemically related small molecules whose properties, such as binding affinity to a given target protein, are progressively tailored to a particular drug discovery goal.