Search Results for author: David E. Shaw

Found 3 papers, 1 papers with code

Generating Realistic 3D Molecules with an Equivariant Conditional Likelihood Model

no code implementations29 Sep 2021 James P. Roney, Paul Maragakis, Peter Skopp, David E. Shaw

In this paper, we present GEN3D, a model that concurrently generates molecular graphs and 3D geometries, and is equivariant to rotations, translations, and atom permutations.

Drug Discovery

Efficient hyperparameter optimization by way of PAC-Bayes bound minimization

1 code implementation14 Aug 2020 John J. Cherian, Andrew G. Taube, Robert T. McGibbon, Panagiotis Angelikopoulos, Guy Blanc, Michael Snarski, Daniel D. Richman, John L. Klepeis, David E. Shaw

Identifying optimal values for a high-dimensional set of hyperparameters is a problem that has received growing attention given its importance to large-scale machine learning applications such as neural architecture search.

Hyperparameter Optimization Neural Architecture Search

A deep-learning view of chemical space designed to facilitate drug discovery

no code implementations7 Feb 2020 Paul Maragakis, Hunter Nisonoff, Brian Cole, David E. Shaw

Drug discovery projects entail cycles of design, synthesis, and testing that yield a series of chemically related small molecules whose properties, such as binding affinity to a given target protein, are progressively tailored to a particular drug discovery goal.

Design Synthesis Drug Discovery

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