no code implementations • 16 Mar 2024 • Christophe Bonneville, Xiaolong He, April Tran, Jun Sur Park, William Fries, Daniel A. Messenger, Siu Wun Cheung, Yeonjong Shin, David M. Bortz, Debojyoti Ghosh, Jiun-Shyan Chen, Jonathan Belof, Youngsoo Choi
Numerical solvers of partial differential equations (PDEs) have been widely employed for simulating physical systems.
1 code implementation • 20 Nov 2023 • April Tran, Xiaolong He, Daniel A. Messenger, Youngsoo Choi, David M. Bortz
With WLaSDI, the local latent space is obtained using weak-form equation learning techniques.
no code implementations • 9 Oct 2023 • Daniel A. Messenger, Joshua W. Burby, David M. Bortz
In this work we extend this capability to the problem of coarse-graining Hamiltonian dynamics which possess approximate symmetries associated with timescale separation.
1 code implementation • 26 Feb 2023 • David M. Bortz, Daniel A. Messenger, Vanja Dukic
We introduce the Weak-form Estimation of Nonlinear Dynamics (WENDy) method for estimating model parameters for non-linear systems of ODEs.
no code implementations • 29 Nov 2022 • Daniel A. Messenger, David M. Bortz
Conversely, we also show that in general the WSINDy estimator is only conditionally asymptotically consistent, yielding discovery of spurious terms with probability one if the noise level is above some critical threshold and the nonlinearities exhibit sufficiently fast growth.
no code implementations • 16 Jun 2022 • Lewis R. Baker, Moshe T. Gordon, Brian P. Ziemba, Victoria Gershuny, Joseph J. Falke, David M. Bortz
The primary contribution of this work is a study of the robustness of this method to infer parameters of a three-state HMM, and a discussion of the challenges and degeneracies that arise from considering three states.
1 code implementation • 29 Apr 2022 • Daniel A. Messenger, Graycen E. Wheeler, Xuedong Liu, David M. Bortz
Motivated by the success of IPS models to describe the spatial movement of organisms, we develop WSINDy for second order IPSs to model the movement of communities of cells.
1 code implementation • 8 Mar 2022 • Daniel A. Messenger, Emiliano Dall'Anese, David M. Bortz
This paper presents an online algorithm for identification of partial differential equations (PDEs) based on the weak-form sparse identification of nonlinear dynamics algorithm (WSINDy).
no code implementations • 14 Oct 2021 • Daniel A. Messenger, David M. Bortz
We develop a weak-form sparse identification method for interacting particle systems (IPS) with the primary goals of reducing computational complexity for large particle number $N$ and offering robustness to either intrinsic or extrinsic noise.
no code implementations • 28 Apr 2021 • Jacqueline M. Wentz, David M. Bortz
We present the analytical singular value decomposition of the stoichiometry matrix for a spatially discrete reaction-diffusion system on a one dimensional domain.
2 code implementations • 6 Jul 2020 • Daniel A. Messenger, David M. Bortz
Furthermore, our Fourier-based implementation reveals a connection between robustness to noise and the spectra of test functions, which we utilize in an \textit{a priori} selection algorithm for test functions.
no code implementations • 9 May 2020 • Daniel A. Messenger, David M. Bortz
We present a weak formulation and discretization of the system discovery problem from noisy measurement data.
Numerical Analysis Numerical Analysis