Search Results for author: David M. Bortz

Found 12 papers, 5 papers with code

Weak-Form Latent Space Dynamics Identification

1 code implementation20 Nov 2023 April Tran, Xiaolong He, Daniel A. Messenger, Youngsoo Choi, David M. Bortz

With WLaSDI, the local latent space is obtained using weak-form equation learning techniques.

Coarse-Graining Hamiltonian Systems Using WSINDy

no code implementations9 Oct 2023 Daniel A. Messenger, Joshua W. Burby, David M. Bortz

In this work we extend this capability to the problem of coarse-graining Hamiltonian dynamics which possess approximate symmetries associated with timescale separation.

Direct Estimation of Parameters in ODE Models Using WENDy: Weak-form Estimation of Nonlinear Dynamics

1 code implementation26 Feb 2023 David M. Bortz, Daniel A. Messenger, Vanja Dukic

We introduce the Weak-form Estimation of Nonlinear Dynamics (WENDy) method for estimating model parameters for non-linear systems of ODEs.

Computational Efficiency

Asymptotic consistency of the WSINDy algorithm in the limit of continuum data

no code implementations29 Nov 2022 Daniel A. Messenger, David M. Bortz

Conversely, we also show that in general the WSINDy estimator is only conditionally asymptotically consistent, yielding discovery of spurious terms with probability one if the noise level is above some critical threshold and the nonlinearities exhibit sufficiently fast growth.

Learning diffusion coefficients, kinetic parameters, and the number of underlying states from a multi-state diffusion process: robustness results and application to PDK1/PKC$α$, dynamics

no code implementations16 Jun 2022 Lewis R. Baker, Moshe T. Gordon, Brian P. Ziemba, Victoria Gershuny, Joseph J. Falke, David M. Bortz

The primary contribution of this work is a study of the robustness of this method to infer parameters of a three-state HMM, and a discussion of the challenges and degeneracies that arise from considering three states.

Model Selection

Learning Anisotropic Interaction Rules from Individual Trajectories in a Heterogeneous Cellular Population

1 code implementation29 Apr 2022 Daniel A. Messenger, Graycen E. Wheeler, Xuedong Liu, David M. Bortz

Motivated by the success of IPS models to describe the spatial movement of organisms, we develop WSINDy for second order IPSs to model the movement of communities of cells.

Online Weak-form Sparse Identification of Partial Differential Equations

1 code implementation8 Mar 2022 Daniel A. Messenger, Emiliano Dall'Anese, David M. Bortz

This paper presents an online algorithm for identification of partial differential equations (PDEs) based on the weak-form sparse identification of nonlinear dynamics algorithm (WSINDy).

Learning Mean-Field Equations from Particle Data Using WSINDy

no code implementations14 Oct 2021 Daniel A. Messenger, David M. Bortz

We develop a weak-form sparse identification method for interacting particle systems (IPS) with the primary goals of reducing computational complexity for large particle number $N$ and offering robustness to either intrinsic or extrinsic noise.

Analytical singular value decomposition for a class of stoichiometry matrices

no code implementations28 Apr 2021 Jacqueline M. Wentz, David M. Bortz

We present the analytical singular value decomposition of the stoichiometry matrix for a spatially discrete reaction-diffusion system on a one dimensional domain.

Weak SINDy For Partial Differential Equations

2 code implementations6 Jul 2020 Daniel A. Messenger, David M. Bortz

Furthermore, our Fourier-based implementation reveals a connection between robustness to noise and the spectra of test functions, which we utilize in an \textit{a priori} selection algorithm for test functions.

Weak SINDy: Galerkin-Based Data-Driven Model Selection

no code implementations9 May 2020 Daniel A. Messenger, David M. Bortz

We present a weak formulation and discretization of the system discovery problem from noisy measurement data.

Numerical Analysis Numerical Analysis

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