no code implementations • 25 Mar 2024 • Yosuke Bando, Ramdas Pillai, Atsushi Kajita, Farhan Abdul Hakeem, Yves Quemener, Hua-an Tseng, Kiryl D. Piatkevich, Changyang Linghu, Xue Han, Edward S. Boyden
In voltage imaging, where the membrane potentials of individual neurons are recorded at from hundreds to thousand frames per second using fluorescence microscopy, data processing presents a challenge.
1 code implementation • 10 Jun 2023 • Josué Page Vizcaíno, Panagiotis Symvoulidis, Zeguan Wang, Jonas Jelten, Paolo Favaro, Edward S. Boyden, Tobias Lasser
Real-time 3D fluorescence microscopy is crucial for the spatiotemporal analysis of live organisms, such as neural activity monitoring.
no code implementations • 6 Apr 2022 • Leander Lauenburg, Zudi Lin, Ruihan Zhang, Márcia dos Santos, Siyu Huang, Ignacio Arganda-Carreras, Edward S. Boyden, Hanspeter Pfister, Donglai Wei
Instance segmentation for unlabeled imaging modalities is a challenging but essential task as collecting expert annotation can be expensive and time-consuming.
no code implementations • 30 May 2017 • David Rolnick, Yaron Meirovitch, Toufiq Parag, Hanspeter Pfister, Viren Jain, Jeff W. Lichtman, Edward S. Boyden, Nir Shavit
Deep learning algorithms for connectomics rely upon localized classification, rather than overall morphology.
no code implementations • 2 Jun 2015 • Samuel G. Rodriques, Adam H. Marblestone, Max Mankin, Lowell Wood, Edward S. Boyden
We introduce a fiber-optic architecture for neural recording without contrast agents, and study its properties theoretically.
no code implementations • 21 Apr 2014 • Adam H. Marblestone, Evan R Daugharthy, Reza Kalhor, Ian D Peikon, Justus M Kebschull, Seth L Shipman, Yuriy Mishchenko, Je Hyuk Lee, Konrad P. Kording, Edward S. Boyden, Anthony M Zador, George M. Church
We propose a neural connectomics strategy called Fluorescent In-Situ Sequencing of Barcoded Individual Neuronal Connections (FISSEQ-BOINC), leveraging fluorescent in situ nucleic acid sequencing in fixed tissue (FISSEQ).
Neurons and Cognition
no code implementations • 24 Jun 2013 • Adam H. Marblestone, Bradley M. Zamft, Yael G. Maguire, Mikhail G. Shapiro, Thaddeus R. Cybulski, Joshua I. Glaser, Dario Amodei, P. Benjamin Stranges, Reza Kalhor, David A. Dalrymple, Dongjin Seo, Elad Alon, Michel M. Maharbiz, Jose M. Carmena, Jan M. Rabaey, Edward S. Boyden, George M. Church, Konrad P. Kording
Simultaneously measuring the activities of all neurons in a mammalian brain at millisecond resolution is a challenge beyond the limits of existing techniques in neuroscience.
Neurons and Cognition Biological Physics